BMRB Entry 34236

Name: Solution structure of mule deer prion protein with polymorphism S138
Published: 2019-08-23

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PDB ID: 6fnv
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR34236
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of mule deer prion protein with polymorphism S138

Deposition date:

2018-02-05

Original release date:

2019-08-23

Authors:

Slapsak, Urska; Ilc, Gregor; Plavec, Janez

Citation:

Citation: Slapsak, Urska; Ilc, Gregor; Plavec, Janez. "Solution structure of mule deer prion protein with polymorphism S138" .

Assembly members:

Assembly members:
Major prion protein, polymer, 140 residues, 16008.847 Da.

Natural source:

Natural source: Common Name: Mule deer Taxonomy ID: 9872 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Odocoileus hemionus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Major prion protein: GQGGTHSQWNKPSKPKTNMK HVAGAAAAGAVVGGLGGYML GSAMSRPLIHFGNDYEDRYY RENMYRYPNQVYYRPVDQYN NQNTFVHDCVNITVKQHTVT TTTKGENFTETDIKMMERVV EQMCITQYQRESQAYYQRGA

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	473
15N chemical shifts	153
1H chemical shifts	951

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 140 residues - 16008.847 Da.

1	GLY	GLN	GLY	GLY	THR	HIS	SER	GLN	TRP	ASN
2	LYS	PRO	SER	LYS	PRO	LYS	THR	ASN	MET	LYS
3	HIS	VAL	ALA	GLY	ALA	ALA	ALA	ALA	GLY	ALA
4	VAL	VAL	GLY	GLY	LEU	GLY	GLY	TYR	MET	LEU
5	GLY	SER	ALA	MET	SER	ARG	PRO	LEU	ILE	HIS
6	PHE	GLY	ASN	ASP	TYR	GLU	ASP	ARG	TYR	TYR
7	ARG	GLU	ASN	MET	TYR	ARG	TYR	PRO	ASN	GLN
8	VAL	TYR	TYR	ARG	PRO	VAL	ASP	GLN	TYR	ASN
9	ASN	GLN	ASN	THR	PHE	VAL	HIS	ASP	CYS	VAL
10	ASN	ILE	THR	VAL	LYS	GLN	HIS	THR	VAL	THR
11	THR	THR	THR	LYS	GLY	GLU	ASN	PHE	THR	GLU
12	THR	ASP	ILE	LYS	MET	MET	GLU	ARG	VAL	VAL
13	GLU	GLN	MET	CYS	ILE	THR	GLN	TYR	GLN	ARG
14	GLU	SER	GLN	ALA	TYR	TYR	GLN	ARG	GLY	ALA

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 34236

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	GLY	GLN	GLY	GLY	THR	HIS	SER	GLN	TRP	ASN
2	LYS	PRO	SER	LYS	PRO	LYS	THR	ASN	MET	LYS
3	HIS	VAL	ALA	GLY	ALA	ALA	ALA	ALA	GLY	ALA
4	VAL	VAL	GLY	GLY	LEU	GLY	GLY	TYR	MET	LEU
5	GLY	SER	ALA	MET	SER	ARG	PRO	LEU	ILE	HIS
6	PHE	GLY	ASN	ASP	TYR	GLU	ASP	ARG	TYR	TYR
7	ARG	GLU	ASN	MET	TYR	ARG	TYR	PRO	ASN	GLN
8	VAL	TYR	TYR	ARG	PRO	VAL	ASP	GLN	TYR	ASN
9	ASN	GLN	ASN	THR	PHE	VAL	HIS	ASP	CYS	VAL
10	ASN	ILE	THR	VAL	LYS	GLN	HIS	THR	VAL	THR
11	THR	THR	THR	LYS	GLY	GLU	ASN	PHE	THR	GLU
12	THR	ASP	ILE	LYS	MET	MET	GLU	ARG	VAL	VAL
13	GLU	GLN	MET	CYS	ILE	THR	GLN	TYR	GLN	ARG
14	GLU	SER	GLN	ALA	TYR	TYR	GLN	ARG	GLY	ALA

1	GLY	GLN	GLY	GLY	THR	HIS	SER	GLN	TRP	ASN
2	LYS	PRO	SER	LYS	PRO	LYS	THR	ASN	MET	LYS
3	HIS	VAL	ALA	GLY	ALA	ALA	ALA	ALA	GLY	ALA
4	VAL	VAL	GLY	GLY	LEU	GLY	GLY	TYR	MET	LEU
5	GLY	SER	ALA	MET	SER	ARG	PRO	LEU	ILE	HIS
6	PHE	GLY	ASN	ASP	TYR	GLU	ASP	ARG	TYR	TYR
7	ARG	GLU	ASN	MET	TYR	ARG	TYR	PRO	ASN	GLN
8	VAL	TYR	TYR	ARG	PRO	VAL	ASP	GLN	TYR	ASN
9	ASN	GLN	ASN	THR	PHE	VAL	HIS	ASP	CYS	VAL
10	ASN	ILE	THR	VAL	LYS	GLN	HIS	THR	VAL	THR
11	THR	THR	THR	LYS	GLY	GLU	ASN	PHE	THR	GLU
12	THR	ASP	ILE	LYS	MET	MET	GLU	ARG	VAL	VAL
13	GLU	GLN	MET	CYS	ILE	THR	GLN	TYR	GLN	ARG
14	GLU	SER	GLN	ALA	TYR	TYR	GLN	ARG	GLY	ALA

1	GLY	GLN	GLY	GLY	THR	HIS	SER	GLN	TRP	ASN
2	LYS	PRO	SER	LYS	PRO	LYS	THR	ASN	MET	LYS
3	HIS	VAL	ALA	GLY	ALA	ALA	ALA	ALA	GLY	ALA
4	VAL	VAL	GLY	GLY	LEU	GLY	GLY	TYR	MET	LEU
5	GLY	SER	ALA	MET	SER	ARG	PRO	LEU	ILE	HIS
6	PHE	GLY	ASN	ASP	TYR	GLU	ASP	ARG	TYR	TYR
7	ARG	GLU	ASN	MET	TYR	ARG	TYR	PRO	ASN	GLN
8	VAL	TYR	TYR	ARG	PRO	VAL	ASP	GLN	TYR	ASN
9	ASN	GLN	ASN	THR	PHE	VAL	HIS	ASP	CYS	VAL
10	ASN	ILE	THR	VAL	LYS	GLN	HIS	THR	VAL	THR
11	THR	THR	THR	LYS	GLY	GLU	ASN	PHE	THR	GLU
12	THR	ASP	ILE	LYS	MET	MET	GLU	ARG	VAL	VAL
13	GLU	GLN	MET	CYS	ILE	THR	GLN	TYR	GLN	ARG
14	GLU	SER	GLN	ALA	TYR	TYR	GLN	ARG	GLY	ALA