BMRB Entry 34787

Name: RDC-refined Interleukin-4 (wild type) pH 5.6
Published: 2023-10-20

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PDB ID: 8ch7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34787
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: RDC-refined Interleukin-4 (wild type) pH 5.6

Deposition date: 2023-02-07 Original release date: 2023-10-20

Authors: Vaz, D.; Rodrigues, J.; Loureiro-Ferreira, N.; Mueller, T.; Sebald, W.; Redfield, C.; Brito, R.

Citation: Vaz, D.; Rodrigues, J.; Loureiro-Ferreira, N.; Mueller, T.; Sebald, W.; Redfield, C.; Brito, R.. "RDC-refined Interleukin-4 (wild type) pH 5.6" .

Assembly members:
entity_1, polymer, 129 residues, 14989.248 Da.

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
entity_1: HKCDITLQEIIKTLNSLTEQ KTLCTELTVTDIFAASKNTT EKETFCRAATVLRQFYSHHE KDTRCLGATAQQFHRHKQLI RFLKRLDRNLWGLAGLNSCP VKEANQSTLENFLERLKTIM REKYSKCSS

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	260
15N chemical shifts	139
1H chemical shifts	838

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 129 residues - 14989.248 Da.

1

HIS

LYS

CYS

ASP

ILE

THR

LEU

GLN

GLU

ILE

2

ILE

LYS

THR

LEU

ASN

SER

LEU

THR

GLU

GLN

3

LYS

THR

LEU

CYS

THR

GLU

LEU

THR

VAL

THR

4

ASP

ILE

PHE

ALA

SER

LYS

ASN

THR

5

GLU

LYS

GLU

THR

PHE

CYS

ARG

ALA

THR

6

VAL

LEU

ARG

GLN

PHE

TYR

SER

HIS

GLU

7

LYS

ASP

THR

ARG

CYS

LEU

GLY

ALA

THR

ALA

8

GLN

PHE

HIS

ARG

HIS

LYS

GLN

LEU

ILE

9

ARG

PHE

LEU

LYS

ARG

LEU

ASP

ARG

ASN

LEU

10

TRP

GLY

LEU

ALA

GLY

LEU

ASN

SER

CYS

PRO

11

VAL

LYS

GLU

ALA

ASN

GLN

SER

THR

LEU

GLU

12

ASN

PHE

LEU

GLU

ARG

LEU

LYS

THR

ILE

MET

13

ARG

GLU

LYS

TYR

SER

LYS

CYS

SER

Samples:

sample_1: Interleukin-4 (IL-4), [U-13C; U-15N], 1.5 ± 0.1 mM; NaPi 10 mM

sample_conditions_1: ionic strength: 10 mM; pH: 5.6; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC IPAP	sample_1	anisotropic	sample_conditions_1
2D 1H-15N HSQC IPAP	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY-HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY-HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-13C HCCH-COSY	sample_1	isotropic	sample_conditions_1
3D 1H-13C HCCH-TOCSY	sample_1	isotropic	sample_conditions_1

Software:

X-PLOR NIH v3.6, Schwieters, Kuszewski, Tjandra and Clore - refinement, structure calculation

Felix, Accelrys Software Inc. - chemical shift assignment, peak picking

NMR spectrometers:

Oxford Oxford 750 MHz
Oxford Oxford 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts