BMRB Entry 51983
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51983
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Title: Chemical shift assignments for the seventh and eighth (HhH)2 repeats from Topoisomerase V PubMed: 37262333
Deposition date: 2023-05-30 Original release date: 2023-08-19
Authors: Petersen, Mark; Fang, Rebecca; Majumdar, Ananya; Barrick, Doug
Citation: Petersen, Mark; Fang, Rebecca; Majumdar, Ananya; Barrick, Doug. "Stability Islands and the Folding Cooperativity of a Seven-Repeat Array from Topoisomerase V" J. Am. Chem. Soc. 145, 12641-12650 (2023).
Assembly members:
entity_1, polymer, 139 residues, Formula weight is not available
Natural source: Common Name: Methanopyrus kandleri Taxonomy ID: 2320 Superkingdom: Archaea Kingdom: not available Genus/species: Methanopyrus kandleri
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pMal
Entity Sequences (FASTA):
entity_1: GGSWGPEFKFLLNIEGVGPK
LAERILEAVDYDLERLASLN
PEELAEKVEGLGEELAERVV
YAARERVESRRKSGRQERSE
EEWKEWLERKVGEGRARRLI
EYFGSAGEVGKLVENAEVSK
LLEVPGIGDEAVARLVPGY
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 398 |
15N chemical shifts | 132 |
1H chemical shifts | 132 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | Topoisomerase V repeats GH | 1 |
Entities:
Entity 1, Topoisomerase V repeats GH 139 residues - Formula weight is not available
1 | GLY | GLY | SER | TRP | GLY | PRO | GLU | PHE | LYS | PHE | ||||
2 | LEU | LEU | ASN | ILE | GLU | GLY | VAL | GLY | PRO | LYS | ||||
3 | LEU | ALA | GLU | ARG | ILE | LEU | GLU | ALA | VAL | ASP | ||||
4 | TYR | ASP | LEU | GLU | ARG | LEU | ALA | SER | LEU | ASN | ||||
5 | PRO | GLU | GLU | LEU | ALA | GLU | LYS | VAL | GLU | GLY | ||||
6 | LEU | GLY | GLU | GLU | LEU | ALA | GLU | ARG | VAL | VAL | ||||
7 | TYR | ALA | ALA | ARG | GLU | ARG | VAL | GLU | SER | ARG | ||||
8 | ARG | LYS | SER | GLY | ARG | GLN | GLU | ARG | SER | GLU | ||||
9 | GLU | GLU | TRP | LYS | GLU | TRP | LEU | GLU | ARG | LYS | ||||
10 | VAL | GLY | GLU | GLY | ARG | ALA | ARG | ARG | LEU | ILE | ||||
11 | GLU | TYR | PHE | GLY | SER | ALA | GLY | GLU | VAL | GLY | ||||
12 | LYS | LEU | VAL | GLU | ASN | ALA | GLU | VAL | SER | LYS | ||||
13 | LEU | LEU | GLU | VAL | PRO | GLY | ILE | GLY | ASP | GLU | ||||
14 | ALA | VAL | ALA | ARG | LEU | VAL | PRO | GLY | TYR |
Samples:
sample_1: Topoisomerase V repeat G, [U-100% 13C; U-100% 15N], 500 uM; sodium phosphate 50 mM; sodium chloride 50 mM
sample_2: Topoisomerase V repeat G, [U-100% 15N], 500 uM; sodium phosphate 50 mM; sodium chloride 50 mM
sample_conditions_1: pH: 6.4; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
2D 1H-15N TROSY | sample_2 | isotropic | sample_conditions_1 |
3D HN(CA)N | sample_1 | isotropic | sample_conditions_1 |
3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN - collection
NMRPipe - processing
TALOS-N - data analysis
CARA - chemical shift assignment
NMR spectrometers:
- Bruker AVANCE NEO 800 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts