BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6953

Title: NMR solution of rabbit Prion Protein (91-228)   PubMed: 17415669

Deposition date: 2006-01-27 Original release date: 2007-10-15

Authors: Li, J.; Lin, D.

Citation: Li, J.; Mei, F.; Xiao, G.; Lin, D.. "1H, 13C and 15N resonance assignments of rabbit prion protein (91-228)"  J. Biomol. NMR 38, 181-181 (2007).

Assembly members:
Major prion protein, polymer, 138 residues, Formula weight is not available

Natural source:   Common Name: Rabbit   Taxonomy ID: 9986   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Oryctolagus cuniculus

Experimental source:   Production method: recombiant technology

Entity Sequences (FASTA):
Major prion protein: QGGTHNQWGKPSKPKTSMKH VAGAAAAGAVVGGLGGYMLG SAMSRPLIHFGNDYEDRYYR ENMYRYPNQVYYRPVDQYSN QNSFVHDCVNITVKQHTVTT TTKGENFTETDIKIMERVVE QMCITQYQQESQAAYQRA

Data sets:
Data typeCount
13C chemical shifts532
15N chemical shifts156
1H chemical shifts927

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Major prion protein1

Entities:

Entity 1, Major prion protein 138 residues - Formula weight is not available

1   GLNGLYGLYTHRHISASNGLNTRPGLYLYS
2   PROSERLYSPROLYSTHRSERMETLYSHIS
3   VALALAGLYALAALAALAALAGLYALAVAL
4   VALGLYGLYLEUGLYGLYTYRMETLEUGLY
5   SERALAMETSERARGPROLEUILEHISPHE
6   GLYASNASPTYRGLUASPARGTYRTYRARG
7   GLUASNMETTYRARGTYRPROASNGLNVAL
8   TYRTYRARGPROVALASPGLNTYRSERASN
9   GLNASNSERPHEVALHISASPCYSVALASN
10   ILETHRVALLYSGLNHISTHRVALTHRTHR
11   THRTHRLYSGLYGLUASNPHETHRGLUTHR
12   ASPILELYSILEMETGLUARGVALVALGLU
13   GLNMETCYSILETHRGLNTYRGLNGLNGLU
14   SERGLNALAALATYRGLNARGALA

Samples:

sample_1: Major prion protein, [U-15N; U-13C], 1 mM; acetate buffer 20 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
HNCA-Jsample_1not availablesample_cond_1
3D 13C-separated NOESYsample_1not availablesample_cond_1
3D 15N-separated NOESYsample_1not availablesample_cond_1
HNHAsample_1not availablesample_cond_1

Software:

NMRPipe v2.1 - processing

ARIA v1.2 - refinement, structure solution

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

BMRB 15394 15399 16328 16616 7142
PDB
EMBL CBK44083
GB AAC48697 AAD01554 ABL75505 AEM44421 AEM44422
REF NP_001075490 XP_008254357 XP_008254358
SP Q95211
AlphaFold Q95211

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts