BMRB Entry 10055

Name: Solution Structure of Glia Maturation Factor-gamma from Mus Musculus
Published: 2008-08-13

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PDB ID: 1wfs
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10055
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Glia Maturation Factor-gamma from Mus Musculus

Deposition date:

2006-11-29

Original release date:

2008-08-13

Authors:

Goroncy, A.; Kigawa, T.; Koshiba, S.; Kobayashi, N.; Tochio, N.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Goroncy, A.; Kigawa, T.; Koshiba, S.; Kobayashi, N.; Tochio, N.; Inoue, M.; Yokoyama, S.. "Solution Structure of Glia Maturation Factor-gamma from Mus Musculus" .

Assembly members:

Assembly members:
COFILIN-ADF-domain, polymer, 151 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030324-83

Entity Sequences (FASTA):

Entity Sequences (FASTA):
COFILIN-ADF-domain: GSSGSSGSDSLVVCEVDPEL KETLRKFRFRKETNNAAIIM KVDKDRQMVVLEDELQNISP EELKLELPERQPRFVVYSYK YVHDDGRVSYPLCFIFSSPV GCKPEQQMMYAGSKNRLVQT AELTKVFEIRTTDDLTETWL KEKLASGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	684
15N chemical shifts	161
1H chemical shifts	1091

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Glia maturation factor gamma	1

Entities:

Entity 1, Glia maturation factor gamma 151 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

SER

ASP

SER

2

LEU

VAL

CYS

GLU

VAL

ASP

PRO

GLU

LEU

3

LYS

GLU

THR

LEU

ARG

LYS

PHE

ARG

PHE

ARG

4

LYS

GLU

THR

ASN

ALA

ILE

MET

5

LYS

VAL

ASP

LYS

ASP

ARG

GLN

MET

VAL

6

LEU

GLU

ASP

GLU

LEU

GLN

ASN

ILE

SER

PRO

7

GLU

LEU

LYS

LEU

GLU

LEU

PRO

GLU

ARG

8

GLN

PRO

ARG

PHE

VAL

TYR

SER

TYR

LYS

9

TYR

VAL

HIS

ASP

GLY

ARG

VAL

SER

TYR

10

PRO

LEU

CYS

PHE

ILE

PHE

SER

PRO

VAL

11

GLY

CYS

LYS

PRO

GLU

GLN

MET

TYR

12

ALA

GLY

SER

LYS

ASN

ARG

LEU

VAL

GLN

THR

13

ALA

GLU

LEU

THR

LYS

VAL

PHE

GLU

ILE

ARG

14

THR

ASP

LEU

THR

GLU

THR

TRP

LEU

15

LYS

GLU

LYS

LEU

ALA

SER

GLY

PRO

SER

16

GLY

Samples:

sample_1: cofilin, [U-13C; U-15N], 1.21 mM; phosphate 20 mM; NaCl 100 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, BRUKER - collection

NMRPipe v20031121, DELAGLIO, FRANK - processing

NMRView v5.0.14, JOHNSON, BRUCE, A. - data analysis

Kujira v0.899, KOBAYASHI, NAOHIRO - data analysis

CYANA v2.0.26, GUENTERT, P. - refinement

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1VKK 1WFS 4JD2
DBJ	BAB22392 BAB26617 BAB29210 BAC76941 BAF76657
GB	AAG22804 AAH11488 EDL13977 EDL24135 EDM07890
REF	NP_001034281 NP_001277479 NP_071307 XP_006228668 XP_006540335
SP	Q9ERL7
AlphaFold	Q9ERL7