BMRB Entry 10065

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PDB ID: 1ufn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10065
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)

Deposition date:

2006-12-25

Original release date:

2008-08-14

Authors:

Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Arakawa, T.; Carninci, P.; Kawai, J.; Hayashizaki, Y.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Arakawa, T.; Carninci, P.; Kawai, J.; Hayashizaki, Y.; Yokoyama, S.. "Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik)" .

Assembly members:

Assembly members:
SAND DOMAIN, polymer, 94 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P021030-59

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SAND DOMAIN: GSSGSSGNDAVDFSPTLPVT CGKAKGTLFQEKLKQGASKK CIQNEAGDWLTVKEFLNEGG RATSKDWKGVIRCNGETLRH LEQKGLLFSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	390
15N chemical shifts	98
1H chemical shifts	604

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	putative nuclear protein homolog 5830484A20Rik	1

Entities:

Entity 1, putative nuclear protein homolog 5830484A20Rik 94 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASN

ASP

ALA

2

VAL

ASP

PHE

SER

PRO

THR

LEU

PRO

VAL

THR

3

CYS

GLY

LYS

ALA

LYS

GLY

THR

LEU

PHE

GLN

4

GLU

LYS

LEU

LYS

GLN

GLY

ALA

SER

LYS

5

CYS

ILE

GLN

ASN

GLU

ALA

GLY

ASP

TRP

LEU

6

THR

VAL

LYS

GLU

PHE

LEU

ASN

GLU

GLY

7

ARG

ALA

THR

SER

LYS

ASP

TRP

LYS

GLY

VAL

8

ILE

ARG

CYS

ASN

GLY

GLU

THR

LEU

ARG

HIS

9

LEU

GLU

GLN

LYS

GLY

LEU

PHE

SER

GLY

10

PRO

SER

GLY

Samples:

sample_1: SAND domain, [U-13C; U-15N], 1.3 mM; phosphate 20 mM; NaCl 100 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.816, Kobayashi, N. - data analysis

CYANA v2.0.14, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1UFN
DBJ	BAC37018 BAE29505
GB	AAH94500 AAW32543
REF	NP_084470 NP_780606 XP_006529132 XP_011246199 XP_011246200
SP	Q8BVK9
AlphaFold	Q8BVK9