BMRB Entry 10260

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PDB ID: 2dju
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10260
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of the fn3 domain of human receptor-type tyrosine-protein phosphatase F

Deposition date:

2008-11-21

Original release date:

2009-11-24

Authors:

Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the fn3 domain of human receptor-type tyrosine-protein phosphatase F" .

Assembly members:

Assembly members:
Fibronectin type III domain, polymer, 106 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050919-20

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Fibronectin type III domain: GSSGSSGPKPPIDLVVTETT ATSVTLTWDSGNSEPVTYYG IQYRAAGTEGPFQEVDGVAT TRYSIGGLSPFSEYAFRVLA VNSIGRGPPSEAVRARTGEQ SGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	411
15N chemical shifts	92
1H chemical shifts	634

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Fibronectin type III domain	1

Entities:

Entity 1, Fibronectin type III domain 106 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

LYS

PRO

2

PRO

ILE

ASP

LEU

VAL

THR

GLU

THR

3

ALA

THR

SER

VAL

THR

LEU

THR

TRP

ASP

SER

4

GLY

ASN

SER

GLU

PRO

VAL

THR

TYR

GLY

5

ILE

GLN

TYR

ARG

ALA

GLY

THR

GLU

GLY

6

PRO

PHE

GLN

GLU

VAL

ASP

GLY

VAL

ALA

THR

7

THR

ARG

TYR

SER

ILE

GLY

LEU

SER

PRO

8

PHE

SER

GLU

TYR

ALA

PHE

ARG

VAL

LEU

ALA

9

VAL

ASN

SER

ILE

GLY

ARG

GLY

PRO

SER

10

GLU

ALA

VAL

ARG

ALA

ARG

THR

GLY

GLU

GLN

11

SER

GLY

PRO

SER

GLY

Samples:

sample_1: fn3 domain, [U-13C; U-15N], 1 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 700 MHz