BMRB Entry 10274

Name: Solution structures of the fn3 domain of human collagen alpha-1(XX) chain
Published: 2009-12-14

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PDB ID: 2ekj
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10274
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of the fn3 domain of human collagen alpha-1(XX) chain

Deposition date:

2008-12-15

Original release date:

2009-12-14

Authors:

Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the fn3 domain of human collagen alpha-1(XX) chain" .

Assembly members:

Assembly members:
Fibronectin type III domain, polymer, 105 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P051017-12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Fibronectin type III domain: GSSGSSGRSPPSNLALASET PDSLQVSWTPPLGRVLHYWL TYAPASGLGPEKSVSVPGAR SHVTLPDLQAATKYRVLVSA IYAAGRSEAVSATGQTACPS GPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	401
15N chemical shifts	93
1H chemical shifts	634

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Fibronectin type III domain	1

Entities:

Entity 1, Fibronectin type III domain 105 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ARG

SER

PRO

2

PRO

SER

ASN

LEU

ALA

LEU

ALA

SER

GLU

THR

3

PRO

ASP

SER

LEU

GLN

VAL

SER

TRP

THR

PRO

4

PRO

LEU

GLY

ARG

VAL

LEU

HIS

TYR

TRP

LEU

5

THR

TYR

ALA

PRO

ALA

SER

GLY

LEU

GLY

PRO

6

GLU

LYS

SER

VAL

SER

VAL

PRO

GLY

ALA

ARG

7

SER

HIS

VAL

THR

LEU

PRO

ASP

LEU

GLN

ALA

8

ALA

THR

LYS

TYR

ARG

VAL

LEU

VAL

SER

ALA

9

ILE

TYR

ALA

GLY

ARG

SER

GLU

ALA

VAL

10

SER

ALA

THR

GLY

GLN

THR

ALA

CYS

PRO

SER

11

GLY

PRO

SER

GLY

Samples:

sample_1: fn3 domain, [U-13C; U-15N], 1 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9827, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz