BMRB Entry 11072

Name: The solution structure of the N-terminal fragment of big defensin
Published: 2009-07-14

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PDB ID: 2rq2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR11072
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the N-terminal fragment of big defensin

Deposition date:

2009-04-13

Original release date:

2009-07-14

Authors:

Kouno, Takahide; Mizuguchi, Mineyuki; Aizawa, Tomoyasu; Shinoda, Hiroyuki; Demura, Makoto; Kawabata, Shun-ichiro; Kawano, Keiichi

Citation:

Citation: Kouno, Takahide; Mizuguchi, Mineyuki; Aizawa, Tomoyasu; Shinoda, Hiroyuki; Demura, Makoto; Kawabata, Shun-ichiro; Kawano, Keiichi. "A novel beta-defensin structure: big defensin changes its N-terminal structure to associate with the target membrane." Biochemistry 48, 7629-7635 (2009).
PubMed: 19588912

Assembly members:

Assembly members:
A chain, polymer, 30 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Japanese horseshoe crab Taxonomy ID: 6853 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Tachypleus tridentatus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
A chain: PAIYIGATVGPSVWAYLVAL VGAAAVTAAN

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	195

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	A chain	1

Entities:

Entity 1, A chain 30 residues - Formula weight is not available

1	PRO	ALA	ILE	TYR	ILE	GLY	ALA	THR	VAL	GLY
2	PRO	SER	VAL	TRP	ALA	TYR	LEU	VAL	ALA	LEU
3	VAL	GLY	ALA	ALA	ALA	VAL	THR	ALA	ALA	ASN

Name	Sample	Sample state	Sample conditions
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_1

BMRB	11022
PDB	2RNG 2RQ2
GB	AAB36095
PRF	2108380A 2112271A
SP	P80957
AlphaFold	P80957

BMRB Entry 11072

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	PRO	ALA	ILE	TYR	ILE	GLY	ALA	THR	VAL	GLY
2	PRO	SER	VAL	TRP	ALA	TYR	LEU	VAL	ALA	LEU
3	VAL	GLY	ALA	ALA	ALA	VAL	THR	ALA	ALA	ASN

1	PRO	ALA	ILE	TYR	ILE	GLY	ALA	THR	VAL	GLY
2	PRO	SER	VAL	TRP	ALA	TYR	LEU	VAL	ALA	LEU
3	VAL	GLY	ALA	ALA	ALA	VAL	THR	ALA	ALA	ASN

1	PRO	ALA	ILE	TYR	ILE	GLY	ALA	THR	VAL	GLY
2	PRO	SER	VAL	TRP	ALA	TYR	LEU	VAL	ALA	LEU
3	VAL	GLY	ALA	ALA	ALA	VAL	THR	ALA	ALA	ASN