BMRB Entry 11281

Name: Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2
Published: 2011-08-18

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PDB ID: 2dzk
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11281
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Zhao, C.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Zhao, C.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2" .

Assembly members:

Assembly members:
UBX domain, polymer, 109 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P060227-20

Entity Sequences (FASTA):

Entity Sequences (FASTA):
UBX domain: GSSGSSGRDRSTIARIQFRL PDGSSFTNQFPSDAPLEEAR QFAAQTVGNTYGNFSLATMF PRREFTREDYKRRLLDLELA PSASVVLLPAGRPATSIVHS SSGDILMID

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	450
15N chemical shifts	99
1H chemical shifts	693

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	UBX domain	1

Entities:

Entity 1, UBX domain 109 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ARG

ASP

ARG

2

SER

THR

ILE

ALA

ARG

ILE

GLN

PHE

ARG

LEU

3

PRO

ASP

GLY

SER

PHE

THR

ASN

GLN

PHE

4

PRO

SER

ASP

ALA

PRO

LEU

GLU

ALA

ARG

5

GLN

PHE

ALA

GLN

THR

VAL

GLY

ASN

THR

6

TYR

GLY

ASN

PHE

SER

LEU

ALA

THR

MET

PHE

7

PRO

ARG

GLU

PHE

THR

ARG

GLU

ASP

TYR

8

LYS

ARG

LEU

ASP

LEU

GLU

LEU

ALA

9

PRO

SER

ALA

SER

VAL

LEU

PRO

ALA

10

GLY

ARG

PRO

ALA

THR

SER

ILE

VAL

HIS

SER

11

SER

GLY

ASP

ILE

LEU

MET

ILE

ASP

Samples:

sample_1: UBX domain, [U-13C; U-15N], 1.18 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296.0 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9748, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2DZK
DBJ	BAC97908