BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 11431

Title: SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HMGB2 (H22Y)

Deposition date: 2011-02-23 Original release date: 2012-06-05

Authors: KURITA, J.; UEWAKI, J.; SHIMAHARA, H.; YOSHIDA, M.; TATE, S.

Citation: KURITA, J.; UEWAKI, J.; SHIMAHARA, H.; YOSHIDA, M.; TATE, S.. "STRUCUTRAL COMPARISON OF TWO HMG-BOXES IN THE NON-HISTONE PROTEIN HMG-2 WITH IN THE HMG-1"  .

Assembly members:
HMG2B-H22Y, polymer, 79 residues, Formula weight is not available

Natural source:   Common Name: pig   Taxonomy ID: 9823   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Sus scrofa

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET22b

Entity Sequences (FASTA):
HMG2B-H22Y: MKKKDPNAPKRPPSAFFLFC SEYRPKIKSEHPGLSIGDTA KKLGEMWSEQSAKDKQPYEQ KAAKLKEKYEKDIAAYRAK

Data sets:
Data typeCount
13C chemical shifts312
15N chemical shifts71
1H chemical shifts547

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1HMG2B-H22Y1

Entities:

Entity 1, HMG2B-H22Y 79 residues - Formula weight is not available

1   METLYSLYSLYSASPPROASNALAPROLYS
2   ARGPROPROSERALAPHEPHELEUPHECYS
3   SERGLUTYRARGPROLYSILELYSSERGLU
4   HISPROGLYLEUSERILEGLYASPTHRALA
5   LYSLYSLEUGLYGLUMETTRPSERGLUGLN
6   SERALALYSASPLYSGLNPROTYRGLUGLN
7   LYSALAALALYSLEULYSGLULYSTYRGLU
8   LYSASPILEALAALATYRARGALALYS

Samples:

sample_1: HMG2B-H22Y, [U-13C; U-15N], 1 mM; H2O 95%; D2O 5%; sodium acetate 50 mM

sample_conditions_1: ionic strength: 50 mM; pH: 5.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 750 MHz

Related Database Links:

BMRB 11430
PDB
EMBL CAA78938
GB EDL28622 EDM11073 EGV91758 ELW73033 EOA95742
REF XP_002187513 XP_003938773 XP_004610441 XP_006194086 XP_007171599
TPG DAA30815

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts