BMRB Entry 15605

Name: HIV-1 gp41 Membrane Proximal Ectodomain Region peptide in DPC micelle
Published: 2008-01-18

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15605

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

HIV-1 gp41 Membrane Proximal Ectodomain Region peptide in DPC micelle

Deposition date:

2007-12-26

Original release date:

2008-01-18

Authors:

Sun, Z.; Oh, K.; Kim, M.; Reinherz, E.; Wagner, G.

Citation:

Citation: Sun, Zhen-Yu; Oh, Kyoung; Kim, Mikyung; Yu, Jessica; Brusic, Vladimir; Song, Likai; Qiao, Zhisong; Wang, Jia-huai; Wagner, Gerhard; Reinherz, Ellis. "HIV-1 Broadly Neutralizing Antibody Extracts Its Epitope from a Kinked gp41 Ectodomain Region on the Viral Membrane" Immunity 28, 52-63 (2008).
PubMed: 18191596

Assembly members:

Assembly members:
mper, polymer, 22 residues, Formula weight is not available

Natural source:

Natural source: Common Name: HIV-1 Taxonomy ID: 11676 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV-1

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET30a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
mper: ELDKWASLWNWFNITNWLWY IK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	118
15N chemical shifts	28
1H chemical shifts	142

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Envelope glycoprotein	1

Entities:

Entity 1, Envelope glycoprotein 22 residues - Formula weight is not available

1

GLU

LEU

ASP

LYS

TRP

ALA

SER

LEU

TRP

ASN

2

TRP

PHE

ASN

ILE

THR

ASN

TRP

LEU

TRP

TYR

3

ILE

LYS

Name	Sample	Sample state	Sample conditions
triple resonance backbone experiments	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_15N-separated_NOESY	sample_1	isotropic	sample_conditions_1
2D NOESY	sample_3	isotropic	sample_conditions_1
HNHA	sample_2	isotropic	sample_conditions_1
HNHB	sample_2	isotropic	sample_conditions_1
3D_15N-separated N(H)-NH NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1

Related Database Links:

BMRB	18237 19215 19262 19263
PDB	1JAU 1JAV 2LP7 2M7W 2M8M 2M8O 2PV6 2X7R 3G9R 3GWO 3H01
DBJ	BAA12995 BAA13003 BAD66665 BAF34648 BAH97413
EMBL	CAA25903 CAA77628 CAD10137 CAD20942
GB	AAA44073 AAA44205 AAA44221 AAA44661 AAA44679
PIR	VCLJSC
PRF	1102247A
REF	NP_057856 NP_579895
SP	P03375 P03377 P04578 P04582 P04624
AlphaFold	P03375 P03377 P04578 P04582 P04624

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 15605

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: