BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 16413

Title: C17orf37 Human 9606 Eukaryota Matazoa Homo sapiens   PubMed: 20556552

Deposition date: 2009-07-23 Original release date: 2010-06-22

Authors: Yang, Chun-Jiun; Huang, Lin-Ya; Chang, Yu-Yung; Shen, Tang-Long; Hsu, Chun-Hua; Chang, Chi-Fon

Citation: Yang, Chun-Jiun; Chang, Chi-Fon; Huang, Lin-Ya; Chang, Yu-Yung; Shen, Tang-Long; Hsu, Chun-Hua. "Resonance assignments of human C35 (C17orf37) protein, a novel tumor biomarker."  Biomol. NMR Assignments 4, 191-193 (2010).

Assembly members:
C17orf37, polymer, 117 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET28

Entity Sequences (FASTA):
C17orf37: GSMSGEPGQTSVAPPPEEVE PGSGVRIVVEYCEPCGFEAT YLELASAVKEQYPGIEIESR LGGTGAFEIEINGQLVFSKL ENGGFPYEKDLIEAIRRASN GETLEKITNSRPPCVIL

Data sets:
Data typeCount
13C chemical shifts457
15N chemical shifts115
1H chemical shifts741

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1C17orf371

Entities:

Entity 1, C17orf37 117 residues - Formula weight is not available

1   GLYSERMETSERGLYGLUPROGLYGLNTHR
2   SERVALALAPROPROPROGLUGLUVALGLU
3   PROGLYSERGLYVALARGILEVALVALGLU
4   TYRCYSGLUPROCYSGLYPHEGLUALATHR
5   TYRLEUGLULEUALASERALAVALLYSGLU
6   GLNTYRPROGLYILEGLUILEGLUSERARG
7   LEUGLYGLYTHRGLYALAPHEGLUILEGLU
8   ILEASNGLYGLNLEUVALPHESERLYSLEU
9   GLUASNGLYGLYPHEPROTYRGLULYSASP
10   LEUILEGLUALAILEARGARGALASERASN
11   GLYGLUTHRLEUGLULYSILETHRASNSER
12   ARGPROPROCYSVALILELEU

Samples:

sample_1: C17orf37, [U-13C; U-15N], 0.1 – 0.3 mM; potassium phosphate 20 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 20 mM; pH: 6.5; pressure: 1 atm; temperature: 310 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D HCCH-COSYsample_1isotropicsample_conditions_1
3D HCACOsample_1isotropicsample_conditions_1

Software:

TOPSPIN v2.1pl4, Bruker Biospin - collection, processing

SPARKY v3.114, Goddard - chemical shift assignment, data analysis, peak picking

NMRView v8.0.a30, Johnson, One Moon Scientific - chemical shift assignment, data analysis

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

PDB
DBJ BAE87852
GB AAH06006 AAO85461 AAR92035 ADQ33214 AIC52550
REF NP_001230776 NP_001253733 NP_001270417 NP_115715 XP_002827689
SP Q9BRT3
AlphaFold Q9BRT3

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts