BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 16495

Title: Solution Structure of PYD peptide from ErbB2   PubMed: 21840311

Deposition date: 2009-09-15 Original release date: 2012-08-03

Authors: Feracci, Mikael; Pimentel, Cyril; Guerlesquin, Francoise

Citation: Feracci, Mikael; Pimentel, Cyril; Bornet, Olivier; Roche, Philippe; Salaun, Daniele; Badache, Ali; Guerlesquin, Francoise. "MEMO associated with an ErbB2 receptor phosphopeptide reveals a new phosphotyrosine motif"  FEBS Lett. 585, 2688-2692 (2011).

Assembly members:
PYD peptide from ErbB2, polymer, 16 residues, 1957.035 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
PYD peptide from ErbB2: SPAFDNLYYWDQDPPE

Data sets:
Data typeCount
1H chemical shifts100

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PYD peptide from ErbB21

Entities:

Entity 1, PYD peptide from ErbB2 16 residues - 1957.035 Da.

1   SERPROALAPHEASPASNLEUTYRTYRTRP
2   ASPGLNASPPROPROGLU

Samples:

sample_1: entity 1 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 3; pressure: 1 atm; temperature: 290 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

DBJ BAG58195 BAG62073 BAJ17684
EMBL CAA27060
GB AAA75493 AAC37531 AAI56756 AAI67147 AAO18082
PRF 1202345A
REF NP_001005862 NP_001276865 NP_004439 XP_003315512 XP_003831500
SP P04626
AlphaFold P04626