BMRB Entry 16508

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16508

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Title:
NMR chemical shift assignments of lipid-bound synaptobrevin
Deposition date:
2009-09-22
Original release date:
2009-11-20
Authors:
Ellena, Jeffrey; Liang, Binyong; Wiktor, Maciej; Stein, Alexander; Cafiso, David; Jahn, Reinhard; Tamm, Lukas
Citation:

Citation: Ellena, Jeffrey; Liang, Binyong; Wiktor, Maciej; Stein, Alexander; Cafiso, David; Jahn, Reinhard; Tamm, Lukas. "Dynamic structure of lipid-bound synaptobrevin suggests a nucleation-propagation mechanism for trans-SNARE complex formation."  Proc. Natl. Acad. Sci. U.S.A. 106, 20306-20311 (2009).
PubMed: 19918058

Assembly members:

Assembly members:
synaptobrevin, polymer, 116 residues, 12703.840 Da.

Natural source:

Natural source:   Common Name: Norway Rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
synaptobrevin: MSATAATVPPAAPAGEGGPP APPPNLTSNRRLQQTQAQVD EVVDIMRVNVDKVLERDQKL SELDDRADALQAGASQFETS AAKLKRKYWWKNLKMMIILG VICAIILIIIIVYFST

Data sets:
Data typeCount
13C chemical shifts360
15N chemical shifts106
1H chemical shifts713

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1synaptobrevin1

Entities:

Entity 1, synaptobrevin 116 residues - 12703.840 Da.

1   METSERALATHRALAALATHRVALPROPRO
2   ALAALAPROALAGLYGLUGLYGLYPROPRO
3   ALAPROPROPROASNLEUTHRSERASNARG
4   ARGLEUGLNGLNTHRGLNALAGLNVALASP
5   GLUVALVALASPILEMETARGVALASNVAL
6   ASPLYSVALLEUGLUARGASPGLNLYSLEU
7   SERGLULEUASPASPARGALAASPALALEU
8   GLNALAGLYALASERGLNPHEGLUTHRSER
9   ALAALALYSLEULYSARGLYSTYRTRPTRP
10   LYSASNLEULYSMETMETILEILELEUGLY
11   VALILECYSALAILEILELEUILEILEILE
12   ILEVALTYRPHESERTHR

Related Database Links:

BMRB 16514 4272
PDB 1KIL 1N7S 1SFC 2KOG 2N1T 3HD7 3IPD 3J96 3J97 3J98 3J99 5CCG 5CCH 5CCI
DBJ BAC41125 BAE90084 BAF82244 BAG73857
EMBL CAA12385 CAA53792 CAB43509
GB AAA42321 AAA60604 AAB03463 AAB62931 AAF15551
REF NP_001027992 NP_001034578 NP_001088233 NP_001272142 NP_033523
SP P63026 P63027 P63044 P63045 Q9N0Y0
TPG DAA18807
AlphaFold P63026 P63027 P63044 P63045 Q9N0Y0

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks