BMRB Entry 16568

Name: Solution Structure of Domain IV from the YbbR family protein of Desulfitobacterium hafniense
Published: 2009-11-04

Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR16568

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Domain IV from the YbbR family protein of Desulfitobacterium hafniense

Deposition date:

2009-10-19

Original release date:

2009-11-04

Authors:

Barb, Adam; Lee, Hsiau-Wei; Belote, Rachel; Ciccosanti, Colleen; Hamilton, Keith; Acton, T.; Xiao, Rong; Everett, John; Montelione, Gaetano; Prestegard, James

Citation:

Citation: Barb, Adam; Cort, John; Seetharaman, Jayaraman; Lew, Scott; Lee, Hsiau-Wei; Acton, Thomas; Xiao, Rong; Kennedy, Michael; Tong, Liang; Montelione, Gaetano; Prestegard, James. "Structures of domains I and IV from YbbR are representative of a widely distributed protein family." Protein Sci. 20, 396-405 (2011).
PubMed: 21154411

Assembly members:

Assembly members:
DhR29a, polymer, 98 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Desulfitobacterium hafniense Taxonomy ID: 49338 Superkingdom: Eubacteria Kingdom: not available Genus/species: Desulfitobacterium hafniense

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET 21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DhR29a: MKTLYDLPIVLRNLPEDLVL EKPLPEVSVTIRAYPEILNN LTKEQISLWIDATGKAVGEH TVKIYWQLPAGIEMVSIPDV TYTLKAKEDPLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	353
15N chemical shifts	80
1H chemical shifts	546

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DhR29a	1

Entities:

Entity 1, DhR29a 98 residues - Formula weight is not available

1

MET

LYS

THR

LEU

TYR

ASP

LEU

PRO

ILE

VAL

2

LEU

ARG

ASN

LEU

PRO

GLU

ASP

LEU

VAL

LEU

3

GLU

LYS

PRO

LEU

PRO

GLU

VAL

SER

VAL

THR

4

ILE

ARG

ALA

TYR

PRO

GLU

ILE

LEU

ASN

5

LEU

THR

LYS

GLU

GLN

ILE

SER

LEU

TRP

ILE

6

ASP

ALA

THR

GLY

LYS

ALA

VAL

GLY

GLU

HIS

7

THR

VAL

LYS

ILE

TYR

TRP

GLN

LEU

PRO

ALA

8

GLY

ILE

GLU

MET

VAL

SER

ILE

PRO

ASP

VAL

9

THR

TYR

THR

LEU

LYS

ALA

LYS

GLU

ASP

PRO

10

LEU

GLU

HIS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	anisotropic	sample_conditions_1
3D HNCO	sample_2	anisotropic	sample_conditions_1
2D 1H-15N HSQC	sample_3	anisotropic	sample_conditions_1

PDB	2L3U
DBJ	BAE86277
EMBL	CDX04750
GB	ACL18896 EHL08933
REF	WP_011461864 WP_015943054

BMRB Entry 16568

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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