BMRB Entry 16580

Name: 2J coupling constants in Ribonuclease T1 from Aspergillus oryzae
Published: 2010-02-08

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16580

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

2J coupling constants in Ribonuclease T1 from Aspergillus oryzae

Deposition date:

2009-10-25

Original release date:

2010-02-08

Authors:

Schmidt, Jurgen; Lohr, Frank

Citation:

Citation: Schmidt, Jurgen; Hua, Yixun; Lohr, Frank. "Correlation of (2)J couplings with protein secondary structure." Proteins 78, 1544-1562 (2010).
PubMed: 20131375

Assembly members:

Assembly members:
RNase_T1, polymer, 104 residues, 11089.3 Da.

Natural source:

Natural source: Common Name: Aspergillus oryzae Taxonomy ID: 5062 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Aspergillus oryzae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pA2T1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RNase_T1: ACDYTCGSNCYSSSDVSTAQ AAGYKLHEDGETVGSNSYPH KYNNYEGFDFSVSSPYYEWP ILSSGDVYSGGSPGADRVVF NENNQLAGVITHTGASGNNF VECT

Data sets:

coupling_constants

Data type	Count
coupling constants	824

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	protein	1

Entities:

Entity 1, protein 104 residues - 11089.3 Da.

1

ALA

CYS

ASP

TYR

THR

CYS

GLY

SER

ASN

CYS

2

TYR

SER

ASP

VAL

SER

THR

ALA

GLN

3

ALA

GLY

TYR

LYS

LEU

HIS

GLU

ASP

GLY

4

GLU

THR

VAL

GLY

SER

ASN

SER

TYR

PRO

HIS

5

LYS

TYR

ASN

TYR

GLU

GLY

PHE

ASP

PHE

6

SER

VAL

SER

PRO

TYR

GLU

TRP

PRO

7

ILE

LEU

SER

GLY

ASP

VAL

TYR

SER

GLY

8

GLY

SER

PRO

GLY

ALA

ASP

ARG

VAL

PHE

9

ASN

GLU

ASN

GLN

LEU

ALA

GLY

VAL

ILE

10

THR

HIS

THR

GLY

ALA

SER

GLY

ASN

PHE

11

VAL

GLU

CYS

THR

Name	Sample	Sample state	Sample conditions
3D Ca-coupled [15N,1H]-TROSY-HNCO	sample_1	isotropic	sample_conditions_1
2D IPAP-type HN(CO-a/b-NCa-J)-TROSY	sample_1	isotropic	sample_conditions_1
2D IPAP-type HN(a/b-NCO-J)-TROSY	sample_1	isotropic	sample_conditions_1
3D Ha-coupled ct-[15N,1H]-TROSY-iHNCA	sample_1	isotropic	sample_conditions_1
3D Cb-coupled [15N,1H]-TROSY-HNCA	sample_1	isotropic	sample_conditions_1
3D Ha-coupled [15N,1H]-TROSY-H(N)COCA	sample_1	isotropic	sample_conditions_1
3D Cb-coupled [15N,1H]-TROSY-H(N)COCA	sample_1	isotropic	sample_conditions_1
2D Cb-coupled [13C,1H]-HSQC	sample_2	isotropic	sample_conditions_1
2D CO-coupled ct-[13C,1H]-HSQC	sample_2	isotropic	sample_conditions_1
3D CO-coupled ct-[15N,1H]-TROSY-HNCA	sample_1	isotropic	sample_conditions_1
3D CO-coupled (H)CANNH	sample_1	isotropic	sample_conditions_1

Related Database Links:

BMRB	15905 16469 1658
PDB	1B2M 1BIR 1BU4 1BVI 1DET 1FYS 1FZU 1G02 1GSP 1HYF 1HZ1 1I0V 1I0X 1I2E 1I2F 1I2G 1I3F 1I3I 1IYY 1LOV 1LOW 1LOY 1LRA 1RGA 1RGC 1RGK 1RGL 1RHL 1RLS 1RN1 1RN4 1RNT 1TRP 1TRQ 1YGW 2AAD 2AAE 2BIR 2BU4 2GSP 2HOH 2RNT 3BIR 3BU4 3GSP 3HOH 3RNT 3SYU 3URP 4BIR 4BU4 4GSP 4HOH 4RNT 5BIR 5BU4 5GSP 5HOH 5RNT 6GSP 6RNT 7GSP 7RNT 8RNT 9RNT
DBJ	BAA05707 BAA08407 BAE64671
EMBL	CAA30560
GB	AAA72541 AAA72994 EED52238 EIT74451 KDE77875
REF	XP_001825804 XP_002377402
SP	P00651
AlphaFold	P00651

BMRB Entry 16580

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: