BMRB Entry 17340
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17340
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Citation: Paterson, Yvonne; Englander, S.; Roder, Heinrich. "An Antibody Binding Site on Cytochrome c Defined by Hydrogen Exchange and Two-Dimensional NMR" Science 249, 755-759 (1990).
PubMed: 1697101
Assembly members:
cytc, polymer, 104 residues, Formula weight is not available
MABE8, polymer, 219 residues, Formula weight is not available
Natural source: Common Name: Horse Taxonomy ID: 9796 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Equus caballus
Experimental source: Production method: purified from the natural source
Entity Sequences (FASTA):
cytc: GDVEKGKKIFVQKCAQCHTV
EKGGKHKTGPNLHGLFGRKT
GQAPGFTYTDANKNKGITWK
EETLMEYLENPKKYIPGTKM
IFAGIKKKTEREDLIAYLKK
ATNE
MABE8: EVQLQQSGAELVKPGASVKL
SCTASGFNIKDTYMHWVKQR
PEKGLEWIGRIDPASGNTKY
DPKFQDKATITADTSSNTAY
LQLSSLTSEDTAVYYCAGYD
YGNFDYWGQGTTLTVSSAET
TPPSVYPLAPGTAALKSSMV
TLGCLVKGYFPEPVTVTWNS
GSLSSGVHTFPAVLQSDLYT
LSSSVTVPSSTWPSQTVTCN
VAHPASSTKVDKKIVPRNC
- chemical_rates
| Data type | Count |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | cytc | 1 |
| 2 | MABE8 | 2 |
Entities:
Entity 1, cytc 104 residues - Formula weight is not available
| 1 | GLY | ASP | VAL | GLU | LYS | GLY | LYS | LYS | ILE | PHE | ||||
| 2 | VAL | GLN | LYS | CYS | ALA | GLN | CYS | HIS | THR | VAL | ||||
| 3 | GLU | LYS | GLY | GLY | LYS | HIS | LYS | THR | GLY | PRO | ||||
| 4 | ASN | LEU | HIS | GLY | LEU | PHE | GLY | ARG | LYS | THR | ||||
| 5 | GLY | GLN | ALA | PRO | GLY | PHE | THR | TYR | THR | ASP | ||||
| 6 | ALA | ASN | LYS | ASN | LYS | GLY | ILE | THR | TRP | LYS | ||||
| 7 | GLU | GLU | THR | LEU | MET | GLU | TYR | LEU | GLU | ASN | ||||
| 8 | PRO | LYS | LYS | TYR | ILE | PRO | GLY | THR | LYS | MET | ||||
| 9 | ILE | PHE | ALA | GLY | ILE | LYS | LYS | LYS | THR | GLU | ||||
| 10 | ARG | GLU | ASP | LEU | ILE | ALA | TYR | LEU | LYS | LYS | ||||
| 11 | ALA | THR | ASN | GLU |
Entity 2, MABE8 219 residues - Formula weight is not available
| 1 | GLU | VAL | GLN | LEU | GLN | GLN | SER | GLY | ALA | GLU | ||||
| 2 | LEU | VAL | LYS | PRO | GLY | ALA | SER | VAL | LYS | LEU | ||||
| 3 | SER | CYS | THR | ALA | SER | GLY | PHE | ASN | ILE | LYS | ||||
| 4 | ASP | THR | TYR | MET | HIS | TRP | VAL | LYS | GLN | ARG | ||||
| 5 | PRO | GLU | LYS | GLY | LEU | GLU | TRP | ILE | GLY | ARG | ||||
| 6 | ILE | ASP | PRO | ALA | SER | GLY | ASN | THR | LYS | TYR | ||||
| 7 | ASP | PRO | LYS | PHE | GLN | ASP | LYS | ALA | THR | ILE | ||||
| 8 | THR | ALA | ASP | THR | SER | SER | ASN | THR | ALA | TYR | ||||
| 9 | LEU | GLN | LEU | SER | SER | LEU | THR | SER | GLU | ASP | ||||
| 10 | THR | ALA | VAL | TYR | TYR | CYS | ALA | GLY | TYR | ASP | ||||
| 11 | TYR | GLY | ASN | PHE | ASP | TYR | TRP | GLY | GLN | GLY | ||||
| 12 | THR | THR | LEU | THR | VAL | SER | SER | ALA | GLU | THR | ||||
| 13 | THR | PRO | PRO | SER | VAL | TYR | PRO | LEU | ALA | PRO | ||||
| 14 | GLY | THR | ALA | ALA | LEU | LYS | SER | SER | MET | VAL | ||||
| 15 | THR | LEU | GLY | CYS | LEU | VAL | LYS | GLY | TYR | PHE | ||||
| 16 | PRO | GLU | PRO | VAL | THR | VAL | THR | TRP | ASN | SER | ||||
| 17 | GLY | SER | LEU | SER | SER | GLY | VAL | HIS | THR | PHE | ||||
| 18 | PRO | ALA | VAL | LEU | GLN | SER | ASP | LEU | TYR | THR | ||||
| 19 | LEU | SER | SER | SER | VAL | THR | VAL | PRO | SER | SER | ||||
| 20 | THR | TRP | PRO | SER | GLN | THR | VAL | THR | CYS | ASN | ||||
| 21 | VAL | ALA | HIS | PRO | ALA | SER | SER | THR | LYS | VAL | ||||
| 22 | ASP | LYS | LYS | ILE | VAL | PRO | ARG | ASN | CYS |
Samples:
sample_1: cytc 1.5 mM; MABE80 – 1.5 mM; potassium phosphate .1 M; ascorbic acid 9 mM; D2O 100%
sample_conditions_1: pH: 5.3; pressure: 1 atm; temperature: 293 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NMR | sample_1 | isotropic | sample_conditions_1 |
Software:
FTNMR, Hare Research, Woodinville, Washington - processing
ModelFree -
NMR spectrometers:
- Bruker AM 500 MHz
Related Database Links:
| PDB |