BMRB Entry 17467
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17467
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Citation: Mylne, Joshua; Mas, Caroline; Hill, Justine. "NMR assignment and secondary structure of the C-terminal DNA binding domain of Arabidopsis thaliana VERNALIZATION1." Biomol. NMR Assignments 6, 5-8 (2012).
PubMed: 21553305
Assembly members:
VRN1_B3b, polymer, 134 residues, Formula weight is not available
Natural source: Common Name: thale-cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pQE-30
Entity Sequences (FASTA):
VRN1_B3b: RSKFYESASARKRTVTAEER
ERAINAAKTFEPTNPFFRVV
LRPSYLYRGCIMYLPSGFAE
KYLSGISGFIKVQLAEKQWP
VRCLYKAGRAKFSQGWYEFT
LENNLGEGDVCVFELLRTRD
FVLKVTAFRVNEYV
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 514 |
| 15N chemical shifts | 122 |
| 1H chemical shifts | 718 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | VRN1_B3b | 1 |
Entities:
Entity 1, VRN1_B3b 134 residues - Formula weight is not available
fragment 208-341 include the C-terminal B3 domain and an upstream region that is highly conserved in VRN1 orthologs
| 1 | ARG | SER | LYS | PHE | TYR | GLU | SER | ALA | SER | ALA | ||||
| 2 | ARG | LYS | ARG | THR | VAL | THR | ALA | GLU | GLU | ARG | ||||
| 3 | GLU | ARG | ALA | ILE | ASN | ALA | ALA | LYS | THR | PHE | ||||
| 4 | GLU | PRO | THR | ASN | PRO | PHE | PHE | ARG | VAL | VAL | ||||
| 5 | LEU | ARG | PRO | SER | TYR | LEU | TYR | ARG | GLY | CYS | ||||
| 6 | ILE | MET | TYR | LEU | PRO | SER | GLY | PHE | ALA | GLU | ||||
| 7 | LYS | TYR | LEU | SER | GLY | ILE | SER | GLY | PHE | ILE | ||||
| 8 | LYS | VAL | GLN | LEU | ALA | GLU | LYS | GLN | TRP | PRO | ||||
| 9 | VAL | ARG | CYS | LEU | TYR | LYS | ALA | GLY | ARG | ALA | ||||
| 10 | LYS | PHE | SER | GLN | GLY | TRP | TYR | GLU | PHE | THR | ||||
| 11 | LEU | GLU | ASN | ASN | LEU | GLY | GLU | GLY | ASP | VAL | ||||
| 12 | CYS | VAL | PHE | GLU | LEU | LEU | ARG | THR | ARG | ASP | ||||
| 13 | PHE | VAL | LEU | LYS | VAL | THR | ALA | PHE | ARG | VAL | ||||
| 14 | ASN | GLU | TYR | VAL |
Related Database Links:
| PDB | 4I1K |
| DBJ | BAB01695 BAF02186 BAH30458 BAJ34355 |
| EMBL | CDX92293 CDX95476 CDX99291 CDY18562 CDY22996 |
| GB | AAM76972 AAM76973 ABD59069 AEE76178 AKX67933 |
| REF | NP_188529 XP_002885287 XP_006299472 XP_006406545 XP_009112206 |
| SP | Q8L3W1 |
| AlphaFold | Q8L3W1 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated peaks
SPARKY: Backbone
or all simulated peaks