BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 17500

Title: Papiliocin   PubMed: 21965682

Deposition date: 2011-03-01 Original release date: 2011-11-03

Authors: Kim, Yangmee; Kim, Jin-Kyoung

Citation: Kim, Jin-Kyoung; Lee, Eunjung; Shin, Soyoung; Jeong, Ki-woong; Lee, Jee-Young; Bae, Su-Young; Kim, Soo-Hyun; Lee, Juneyoung; Kim, Seong Ryul; Lee, Dong Gun; Hwang, Jae-Sam; Kim, Yangmee. "Structure and function of papiliocin with antimicrobial and anti-inflammatory activities isolated from the swallowtail butterfly, Papilio xuthus."  J. Biol. Chem. 286, 41296-41311 (2011).

Assembly members:
papiliocin, polymer, 38 residues, 4010.906 Da.

Natural source:   Common Name: butterfly   Taxonomy ID: 66420   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Papilio xuthus

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
papiliocin: RWKIFKKIEKVGRNVRDGII KAGPAVAVVGQAATVVKX

Data sets:
Data typeCount
1H chemical shifts278

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1papiliocin1

Entities:

Entity 1, papiliocin 38 residues - 4010.906 Da.

1   ARGTRPLYSILEPHELYSLYSILEGLULYS
2   VALGLYARGASNVALARGASPGLYILEILE
3   LYSALAGLYPROALAVALALAVALVALGLY
4   GLNALAALATHRVALVALLYSNH2

Samples:

sample_1: papiliocin 1 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 5.5; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D DQF-COSYsample_1isotropicsample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

NMR spectrometers:

  • Bruker Avance 500 MHz

Related Database Links:

PDB
DBJ BAM18456
GB ACR82292