BMRB Entry 18903

Name: Relaxation study of Delta subunit of RNA polymerase from Bacillus subtilis
Published: 2014-02-14

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18903

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Relaxation study of Delta subunit of RNA polymerase from Bacillus subtilis

Deposition date:

2012-12-16

Original release date:

2014-02-14

Authors:

Kaderavek, Pavel; Sklenar, Vladimir; Zidek, Lukas; Rabatinova, Alzbeta; Krasny, Libor

Citation:

Citation: Kadeavek, Pavel; Zapletal, Vojtch; Rabatinova, Albeta; Krasny, Libor; Sklena, Vladimir; Zidek, Luka. "Spectral density mapping protocols for analysis of molecular motions in disordered proteins." J. Biomol. NMR 58, 193-207 (2014).
PubMed: 24515886

Assembly members:

Assembly members:
delta, polymer, 172 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Bacillus subtilis Taxonomy ID: 1423 Superkingdom: Bacteria Kingdom: not available Genus/species: Bacillus subtilis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET22b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
delta: GIKQYSQEELKEMALVEIAH ELFEEHKKPVPFQELLNEIA SLLGVKKEELGDRIAQFYTD LNIDGRFLALSDQTWGLRSW YPYDQLDEETQPTVKAKKKK AKKAVEEDLDLDEFEEIDED DLDLDEVEEELDLEADDFDE EDLDEDDDDLEIEEDIIDED DEDYDDEEEEIK

Data sets:

heteronucl_NOEs
- heteronuclear_noe_list_1
heteronucl_T1_relaxation
- heteronuclear_T1_list_1
heteronucl_T2_relaxation
- heteronuclear_T2_list_1
- heteronuclear_T2_list_2

Data type	Count
T1 relaxation values	98
T2 relaxation values	203
dipole-CSA cross correlation relaxation values	264
heteronuclear NOE values	96

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	delta	1

Entities:

Entity 1, delta 172 residues - Formula weight is not available

1

GLY

ILE

LYS

GLN

TYR

SER

GLN

GLU

LEU

2

LYS

GLU

MET

ALA

LEU

VAL

GLU

ILE

ALA

HIS

3

GLU

LEU

PHE

GLU

HIS

LYS

PRO

VAL

4

PRO

PHE

GLN

GLU

LEU

ASN

GLU

ILE

ALA

5

SER

LEU

GLY

VAL

LYS

GLU

LEU

6

GLY

ASP

ARG

ILE

ALA

GLN

PHE

TYR

THR

ASP

7

LEU

ASN

ILE

ASP

GLY

ARG

PHE

LEU

ALA

LEU

8

SER

ASP

GLN

THR

TRP

GLY

LEU

ARG

SER

TRP

9

TYR

PRO

TYR

ASP

GLN

LEU

ASP

GLU

THR

10

GLN

PRO

THR

VAL

LYS

ALA

LYS

11

ALA

LYS

ALA

VAL

GLU

ASP

LEU

ASP

12

LEU

ASP

GLU

PHE

GLU

ILE

ASP

GLU

ASP

13

ASP

LEU

ASP

LEU

ASP

GLU

VAL

GLU

14

LEU

ASP

LEU

GLU

ALA

ASP

PHE

ASP

GLU

15

GLU

ASP

LEU

ASP

GLU

ASP

LEU

16

GLU

ILE

GLU

ASP

ILE

ASP

GLU

ASP

17

ASP

GLU

ASP

TYR

ASP

GLU

18

ILE

LYS

Name	Sample	Sample state	Sample conditions
2D R1 15N,1H correlation	sample_1	isotropic	sample_conditions_1
2D R2 15N,1H correlation	sample_1	isotropic	sample_conditions_1
2D NOE 15N,1H correlation	sample_1	isotropic	sample_conditions_1
2D 15N (coupled),1H correlation	sample_1	isotropic	sample_conditions_1
2D 15N,1H correlation - transverse cross-correlated cross-relaxation (symmetrical reconversion)	sample_1	isotropic	sample_conditions_1
2D 15N,1H correlation - longitudinal cross-correlated cross-relaxation (symmetrical reconversion)	sample_1	isotropic	sample_conditions_1

BMRB Entry 18903

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: