BMRB Entry 20124

Name: Structure and lipid interactions of an anti-atherogenic Apolipoprotein J peptide using solution NMR
Published: 2010-12-13

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR20124

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure and lipid interactions of an anti-atherogenic Apolipoprotein J peptide using solution NMR

Deposition date:

2010-05-26

Original release date:

2010-12-13

Authors:

Mishra, Vinod

Citation:

Citation: Mishraa, Vinod; Palgunacharia, Mayakonda; Hudsonb, Jason; Shinc, Ronald; Keenuma, Tamara; Krishnac, N.; Anantharamaiah, G.. "Structure and lipid interactions of an anti-inflammatory and anti-atherogenic 10-residue class Glow asterisk apolipoprotein J peptide using solution NMR" Biochim. Biophys. Acta 1808, 498-507 (2010).
PubMed: 20970404

Assembly members:

Assembly members:
Apolipoprotein_J_Peptide, polymer, 10 residues, 1244 Da.

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Apolipoprotein_J_Peptide: LVGRQLEEFL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	85

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Apolipoprotein_J_Peptide	1

Entities:

Entity 1, Apolipoprotein_J_Peptide 10 residues - 1244 Da.

1

LEU

VAL

GLY

ARG

GLN

LEU

GLU

PHE

LEU

Samples:

sample_1: Apolipoprotein J Peptide1 – 2 mM; H2O 95%; D2O 5%

sample_conditions_1: pH: 5.5; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1

Software:

X-PLOR, Brunger - refinement

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DRX 600 MHz