BMRB Entry 25369

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR25369

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Title:
Solution Structure of DNA Dodecamer with 8-oxoguanine at 10th Position.
Deposition date:
2014-11-26
Original release date:
2017-03-22
Authors:
Gruber, David; Miears, Heather; Hoppins, Joanna; Kiryutin, Aleksey; Kasymov, Rustem; Smirnov, Serge
Citation:

Citation: Hoppins, Joanna; Gruber, David; Miears, Heather; Kiryutin, Alexey; Kasymov, Rustem; Petrova, Darya; Endutkin, Anton; Popov, Alexander; Yurkovskaya, Alexandra; Fedechkin, Stanislav; Brockerman, Jacob; Zharkov, Dmitry; Smirnov, Serge. "8-Oxoguanine Affects DNA Backbone Conformation in the EcoRI Recognition Site and Inhibits Its Cleavage by the Enzyme"  PLoS ONE 11, e0164424-e0164424 (2016).
PubMed: 27749894

Assembly members:

Assembly members:
DNA_(5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3'), polymer, 12 residues, 3679.421 Da.

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3'): CGCGAATTCXCG

Data sets:
Data typeCount
1H chemical shifts160

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')_11
2DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')_21

Entities:

Entity 1, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')_1 12 residues - 3679.421 Da.

1   DCDGDCDGDADADTDTDC8OG
2   DCDG