BMRB Entry 25671

Title:
1H Chemical Shift Assignments of the HIV ISS element
Deposition date:
2015-06-23
Original release date:
2015-11-30
Authors:
Tolbert, Blanton; Jain, Niyati; Morgan, Christopher; Rife, Brittany; Salemi, Marco
Citation:

Citation: Jain, Niyati; Morgan, Christopher; Rife, Brittany; Salemi, Marco; Tolbert, Blanton. "Solution Structure of the HIV-1 Intron Splicing Silencer and Its Interactions with the UP1 Domain of Heterogeneous Nuclear Ribonucleoprotein (hnRNP) A1"  J. Biol. Chem. 291, 2331-2344 (2016).
PubMed: 26607354

Assembly members:

Assembly members:
RNA_(53-MER), polymer, 53 residues, 17006.127 Da.

Natural source:

Natural source:   Common Name: HIV   Taxonomy ID: 11676   Superkingdom: Viruses   Kingdom: not available   Genus/species: Lentivirus Human immunodeficiency virus 1

Experimental source:

Experimental source:   Production method: In vitro transcription   Host organism: T7 dependent In vitro Transcription

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RNA_(53-MER): GGAAUAUUUUUGCUGUACUU UCUAUAGUGAAUAGAGUUAG GCAGGGAUAUUCC

Data sets:
Data typeCount
1H chemical shifts172

Additional metadata:

  • Assembly
  • Samples and Experiments
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  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1RNA (53-MER)1

Entities:

Entity 1, RNA (53-MER) 53 residues - 17006.127 Da.

1   GGAAUAUUUU
2   UGCUGUACUU
3   UCUAUAGUGA
4   AUAGAGUUAG
5   GCAGGGAUAU
6   UCC