BMRB Entry 25934
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25934
MolProbity Validation Chart
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NMR-STAR v3 text file.
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Title: Nizp1-C2HR zinc finger structure PubMed: 26896805
Deposition date: 2015-12-22 Original release date: 2016-02-23
Authors: Berardi, Andrea; Quilici, Giacomo; Spiliotopoulos, Dimitrios; Corral-Rodriguez, Maria Angeles; Martin, Fernando; Degano, Massimo; Tonon, Giovanni; Musco, Giovanna
Citation: Berardi, Andrea; Quilici, Giacomo; Spiliotopoulos, Dimitrios; Corral-Rodriguez, Maria Angeles; Martin, Fernando; Degano, Massimo; Tonon, Giovanni; Musco, Giovanna. "Structural basis for PHDVC5HCHNSD1-C2HRNizp1 interaction: implications for Sotos syndrome" Nucleic Acids Res. 44, 3448-3463 (2016).
Assembly members:
entity_1, polymer, 41 residues, 4984.875 Da.
ZINC ION, non-polymer, 65.409 Da.
Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pETM41
Entity Sequences (FASTA):
entity_1: GAMEVQTSQKSYVCPNCGKI
FRWRVNFIRHLRSRREQKPH
K
- assigned_chemical_shifts
Data type | Count |
15N chemical shifts | 37 |
1H chemical shifts | 267 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | entity_1 | 1 |
2 | ZINC ION | 2 |
Entities:
Entity 1, entity_1 41 residues - 4984.875 Da.
1 | GLY | ALA | MET | GLU | VAL | GLN | THR | SER | GLN | LYS | ||||
2 | SER | TYR | VAL | CYS | PRO | ASN | CYS | GLY | LYS | ILE | ||||
3 | PHE | ARG | TRP | ARG | VAL | ASN | PHE | ILE | ARG | HIS | ||||
4 | LEU | ARG | SER | ARG | ARG | GLU | GLN | LYS | PRO | HIS | ||||
5 | LYS |
Entity 2, ZINC ION - 65.409 Da.
1 | ZN |
Samples:
sample_1: sodium phosphate, [U-99% 13C; U-99% 15N], 0.8 mM; H2O 90%; D2O 10%
sample_2: sodium phosphate, [U-99% 15N], 0.8 mM; H2O 90%; D2O 10%
sample_3: sodium phosphate 0.8 mM; H2O 90%; D2O 10%
sample_4: sodium phosphate 0.8 mM; H2O 100%
sample_conditions_1: ionic strength: 0.150 M; pH: 6.3; pressure: 1 atm; temperature: 295 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_2 | isotropic | sample_conditions_1 |
2D 1H-1H TOCSY | sample_3 | isotropic | sample_conditions_1 |
2D 1H-1H TOCSY | sample_4 | isotropic | sample_conditions_1 |
2D 1H-1H NOESY | sample_3 | isotropic | sample_conditions_1 |
2D 1H-1H NOESY | sample_4 | isotropic | sample_conditions_1 |
3D HNCA | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
Software:
ARIA, Linge, O'Donoghue and Nilges - structure solution
NMR spectrometers:
- Bruker Avance 600 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts