BMRB Entry 26069

Name: Toward the real-time monitoring of HPV-16 E7 phosphorylation events
Published: 2017-07-05

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR26069

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Toward the real-time monitoring of HPV-16 E7 phosphorylation events PubMed: 28126639

Deposition date: 2016-09-14 Original release date: 2017-07-05

Authors: Nogueira, Marcela; Hosek, Tomas; Calcada, Eduardo; Castiglia, Francesca; Massimi, Paola; Banks, Lawrence; Felli, Isabella; Pierattelli, Roberta

Citation: Nogueira, Marcela; Hosek, Tomas; Calcada, Eduardo; Castiglia, Francesca; Massimi, Paola; Banks, Lawrence; Felli, Isabella; Pierattelli, Roberta. "Monitoring HPV-16 E7 phosphorylation events." Virology 503, 70-75 (2017).

Assembly members:
E7_CR3, polymer, 53 residues, Formula weight is not available
ZINC ION, non-polymer, 65.409 Da.

Natural source: Common Name: viruses Taxonomy ID: 10566 Superkingdom: Viruses Kingdom: not available Genus/species: Human papillomavirus

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET21a

Entity Sequences (FASTA):
E7_CR3: AEPDRAHYNIVTFCCKCDST LRLCVQSTHVDIRTLEDLLM GTLGIVCPICSQK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	107
15N chemical shifts	37
1H chemical shifts	60

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HPV 16 E7 CR3	1
2	ZINC ION	2

Entities:

Entity 1, HPV 16 E7 CR3 53 residues - Formula weight is not available

1

ALA

GLU

PRO

ASP

ARG

ALA

HIS

TYR

ASN

ILE

2

VAL

THR

PHE

CYS

LYS

CYS

ASP

SER

THR

3

LEU

ARG

LEU

CYS

VAL

GLN

SER

THR

HIS

VAL

4

ASP

ILE

ARG

THR

LEU

GLU

ASP

LEU

MET

5

GLY

THR

LEU

GLY

ILE

VAL

CYS

PRO

ILE

CYS

6

SER

GLN

LYS

Entity 2, ZINC ION - 65.409 Da.

1

ZN

Samples:

sample_1: E7 CR3, [U-100% 13C; U-100% 15N], 0.25 mM; HEPES 50 mM; potassium chloride 50 mM; DTT 5 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 50 mM; pH: 8.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN v2.0 and 3.1, Bruker Biospin - collection

ccpNMR vv2.3.1, CCPN - chemical shift assignment, data analysis, peak picking

XEASY, Bartels et al. - chemical shift assignment, data analysis

NMR spectrometers:

Bruker Avance 950 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts