BMRB Entry 26322

Name: Backbone 1H, 13C, and 15N Chemical Shift Assignment for Tid1 e-JD
Published: 2022-06-06

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR26322

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, and 15N Chemical Shift Assignment for Tid1 e-JD

Deposition date:

2021-12-06

Original release date:

2022-06-06

Authors:

Jang, Jinhwa; Lee, Sung-Hee; Kang, Dong-Hoon; Kim, Ji-Hun; Sim, Dea-Won; Jo, Kyu-Sung; Won, Hyung-Sik; Ryu, Kyung-Suk; Kim, Eun-Hee; Ryu, Hyojung; Lee, Jin-Hyeok

Citation:

Citation: Jang, Jinhwa. "1H, 13C, and 15N Assigned Chemical Shifts for Tid1 e-JD" BMB reports ., .-..

Assembly members:

Assembly members:
Tid1-eJD, polymer, 106 residues, Formula weight is not available

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: purified from the natural source Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Tid1-eJD: HMLAKEDYYQILGVPRNASQ KEIKKAYYQLAKKYHPDTNK DDPKAKEKFSQLAEAYEVLS DEVKRKQYDAYGSAGFDPGA SGSQHSYWKGGPTVDPEELF RKIFGE

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	271
15N chemical shifts	92
1H chemical shifts	91

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Tid1-eJD	1

Entities:

Entity 1, Tid1-eJD 106 residues - Formula weight is not available

1

HIS

MET

LEU

ALA

LYS

GLU

ASP

TYR

GLN

2

ILE

LEU

GLY

VAL

PRO

ARG

ASN

ALA

SER

GLN

3

LYS

GLU

ILE

LYS

ALA

TYR

GLN

LEU

4

ALA

LYS

TYR

HIS

PRO

ASP

THR

ASN

LYS

5

ASP

PRO

LYS

ALA

LYS

GLU

LYS

PHE

SER

6

GLN

LEU

ALA

GLU

ALA

TYR

GLU

VAL

LEU

SER

7

ASP

GLU

VAL

LYS

ARG

LYS

GLN

TYR

ASP

ALA

8

TYR

GLY

SER

ALA

GLY

PHE

ASP

PRO

GLY

ALA

9

SER

GLY

SER

GLN

HIS

SER

TYR

TRP

LYS

GLY

10

GLY

PRO

THR

VAL

ASP

PRO

GLU

LEU

PHE

11

ARG

LYS

ILE

PHE

GLY

GLU

Samples:

sample_1: Tid1-eJD, [U-13C; U-15N], 200 uM; TRIS 20 mM; sodium chloride 150 mM; DTT 1 mM; H2O 90%; D2O, [U-2H], 10%

sample_conditions_1: ionic strength: 0.15 M; pH: 8.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
HSQC	sample_1	isotropic	sample_conditions_1
HNCACB	sample_1	isotropic	sample_conditions_1
HN(CO)CACB	sample_1	isotropic	sample_conditions_1
HNCO	sample_1	isotropic	sample_conditions_1
HN(CA)CO	sample_1	isotropic	sample_conditions_1

Software:

NMRViewJ v2.4 - chemical shift assignment

NMR spectrometers:

Bruker AR81 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks