BMRB Entry 27113

Name: 1H, 15N and 13C assignments of apo-form dFABP
Published: 2019-10-28

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR27113

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 15N and 13C assignments of apo-form dFABP

Deposition date:

2017-05-26

Original release date:

2019-10-28

Authors:

Cheng, Yi-Yun; Lyu, Ping-Chiang

Citation:

Citation: Cheng, Yi-Yun; Huang, Yun-Fang; Lin, Hsin-Hui; Chang, Wun-Shaing Wayne; Lyu, Ping-Chiang. "The ligand-mediated affinity of brain-type fatty acid-binding protein for membranes determines the directionality of lipophilic cargo transport" Biochim Biophys Acta Mol Cell Biol Lipids 1864, 158506-158506 (2019).
PubMed: 31404652

Assembly members:

Assembly members:
apo-form_dFABP, polymer, 129 residues, Formula weight is not available

Natural source:

Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET23a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
apo-form_dFABP: MSFVGKKYKLDKSENFDEYM KELGVGLVTRKMGNSLSPTV EVTLEGDTYTLTTTSTFKTS AISFKLGVEFDEETLDGRNV KSIITLDGNKLTQEQKGDKP TTIVREFTDNELITTLTIGN VKCVRVYKAV

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	286
15N chemical shifts	121
1H chemical shifts	121

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	apo-form dFABP	1

Entities:

Entity 1, apo-form dFABP 129 residues - Formula weight is not available

1	MET	SER	PHE	VAL	GLY	LYS	LYS	TYR	LYS	LEU
2	ASP	LYS	SER	GLU	ASN	PHE	ASP	GLU	TYR	MET
3	LYS	GLU	LEU	GLY	VAL	GLY	LEU	VAL	THR	ARG
4	LYS	MET	GLY	ASN	SER	LEU	SER	PRO	THR	VAL
5	GLU	VAL	THR	LEU	GLU	GLY	ASP	THR	TYR	THR
6	LEU	THR	THR	THR	SER	THR	PHE	LYS	THR	SER
7	ALA	ILE	SER	PHE	LYS	LEU	GLY	VAL	GLU	PHE
8	ASP	GLU	GLU	THR	LEU	ASP	GLY	ARG	ASN	VAL
9	LYS	SER	ILE	ILE	THR	LEU	ASP	GLY	ASN	LYS
10	LEU	THR	GLN	GLU	GLN	LYS	GLY	ASP	LYS	PRO
11	THR	THR	ILE	VAL	ARG	GLU	PHE	THR	ASP	ASN
12	GLU	LEU	ILE	THR	THR	LEU	THR	ILE	GLY	ASN
13	VAL	LYS	CYS	VAL	ARG	VAL	TYR	LYS	ALA	VAL

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HN(CA)CB	sample_1	isotropic	sample_conditions_1
3D CB(CA)(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 27113

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	MET	SER	PHE	VAL	GLY	LYS	LYS	TYR	LYS	LEU
2	ASP	LYS	SER	GLU	ASN	PHE	ASP	GLU	TYR	MET
3	LYS	GLU	LEU	GLY	VAL	GLY	LEU	VAL	THR	ARG
4	LYS	MET	GLY	ASN	SER	LEU	SER	PRO	THR	VAL
5	GLU	VAL	THR	LEU	GLU	GLY	ASP	THR	TYR	THR
6	LEU	THR	THR	THR	SER	THR	PHE	LYS	THR	SER
7	ALA	ILE	SER	PHE	LYS	LEU	GLY	VAL	GLU	PHE
8	ASP	GLU	GLU	THR	LEU	ASP	GLY	ARG	ASN	VAL
9	LYS	SER	ILE	ILE	THR	LEU	ASP	GLY	ASN	LYS
10	LEU	THR	GLN	GLU	GLN	LYS	GLY	ASP	LYS	PRO
11	THR	THR	ILE	VAL	ARG	GLU	PHE	THR	ASP	ASN
12	GLU	LEU	ILE	THR	THR	LEU	THR	ILE	GLY	ASN
13	VAL	LYS	CYS	VAL	ARG	VAL	TYR	LYS	ALA	VAL

1	MET	SER	PHE	VAL	GLY	LYS	LYS	TYR	LYS	LEU
2	ASP	LYS	SER	GLU	ASN	PHE	ASP	GLU	TYR	MET
3	LYS	GLU	LEU	GLY	VAL	GLY	LEU	VAL	THR	ARG
4	LYS	MET	GLY	ASN	SER	LEU	SER	PRO	THR	VAL
5	GLU	VAL	THR	LEU	GLU	GLY	ASP	THR	TYR	THR
6	LEU	THR	THR	THR	SER	THR	PHE	LYS	THR	SER
7	ALA	ILE	SER	PHE	LYS	LEU	GLY	VAL	GLU	PHE
8	ASP	GLU	GLU	THR	LEU	ASP	GLY	ARG	ASN	VAL
9	LYS	SER	ILE	ILE	THR	LEU	ASP	GLY	ASN	LYS
10	LEU	THR	GLN	GLU	GLN	LYS	GLY	ASP	LYS	PRO
11	THR	THR	ILE	VAL	ARG	GLU	PHE	THR	ASP	ASN
12	GLU	LEU	ILE	THR	THR	LEU	THR	ILE	GLY	ASN
13	VAL	LYS	CYS	VAL	ARG	VAL	TYR	LYS	ALA	VAL

1	MET	SER	PHE	VAL	GLY	LYS	LYS	TYR	LYS	LEU
2	ASP	LYS	SER	GLU	ASN	PHE	ASP	GLU	TYR	MET
3	LYS	GLU	LEU	GLY	VAL	GLY	LEU	VAL	THR	ARG
4	LYS	MET	GLY	ASN	SER	LEU	SER	PRO	THR	VAL
5	GLU	VAL	THR	LEU	GLU	GLY	ASP	THR	TYR	THR
6	LEU	THR	THR	THR	SER	THR	PHE	LYS	THR	SER
7	ALA	ILE	SER	PHE	LYS	LEU	GLY	VAL	GLU	PHE
8	ASP	GLU	GLU	THR	LEU	ASP	GLY	ARG	ASN	VAL
9	LYS	SER	ILE	ILE	THR	LEU	ASP	GLY	ASN	LYS
10	LEU	THR	GLN	GLU	GLN	LYS	GLY	ASP	LYS	PRO
11	THR	THR	ILE	VAL	ARG	GLU	PHE	THR	ASP	ASN
12	GLU	LEU	ILE	THR	THR	LEU	THR	ILE	GLY	ASN
13	VAL	LYS	CYS	VAL	ARG	VAL	TYR	LYS	ALA	VAL