BMRB Entry 27209
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR27209
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Title: 1HN, 13C, and 15N Resonance Assignments of the human DNA Ligase 3 DNA-Binding Domain (residues 257-477) PubMed: 31093909
Deposition date: 2017-08-08 Original release date: 2019-07-10
Authors: Roth, Braden; Varney, Kristen; Weber, David; Tomkinson, Alan
Citation: Roth, Braden; Varney, Kristen; Yang, Hui; Weber, David; Tomkinson, Alan. "1HN, 13C, and 15N backbone resonance assignments of the human DNA ligase 3 DNA-binding domain (residues 257-477)" Biomol. NMR Assignments 13, 305-308 (2019).
Assembly members:
LIG3DBD, polymer, 222 residues, 25195.8182 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pHGK-LIG3DBD
Entity Sequences (FASTA):
LIG3DBD: SRHKDCLLREFRKLCAMVAD
NPSYNTKTQIIQDFLRKGSA
GDGFHGDVYLTVKLLLPGVI
KTVYNLNDKQIVKLFSRIFN
CNPDDMARDLEQGDVSETIR
VFFEQSKSFPPAAKSLLTIQ
EVDEFLLRLSKLTKEDEQQQ
ALQDIASRCTANDLKCIIRL
IKHDLKMNSGAKHVLDALDP
NAYEAFKASRNLQDVVERVL
HNAQEVEKEPGQRRALSVQA
SL
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 589 |
| 15N chemical shifts | 186 |
| 1H chemical shifts | 186 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | LIG3DBD | 1 |
Entities:
Entity 1, LIG3DBD 222 residues - 25195.8182 Da.
residue 1 represents a non-native amino acid resulting from TEV cleavage of the protein from a fusion partner
| 1 | SER | ARG | HIS | LYS | ASP | CYS | LEU | LEU | ARG | GLU | ||||
| 2 | PHE | ARG | LYS | LEU | CYS | ALA | MET | VAL | ALA | ASP | ||||
| 3 | ASN | PRO | SER | TYR | ASN | THR | LYS | THR | GLN | ILE | ||||
| 4 | ILE | GLN | ASP | PHE | LEU | ARG | LYS | GLY | SER | ALA | ||||
| 5 | GLY | ASP | GLY | PHE | HIS | GLY | ASP | VAL | TYR | LEU | ||||
| 6 | THR | VAL | LYS | LEU | LEU | LEU | PRO | GLY | VAL | ILE | ||||
| 7 | LYS | THR | VAL | TYR | ASN | LEU | ASN | ASP | LYS | GLN | ||||
| 8 | ILE | VAL | LYS | LEU | PHE | SER | ARG | ILE | PHE | ASN | ||||
| 9 | CYS | ASN | PRO | ASP | ASP | MET | ALA | ARG | ASP | LEU | ||||
| 10 | GLU | GLN | GLY | ASP | VAL | SER | GLU | THR | ILE | ARG | ||||
| 11 | VAL | PHE | PHE | GLU | GLN | SER | LYS | SER | PHE | PRO | ||||
| 12 | PRO | ALA | ALA | LYS | SER | LEU | LEU | THR | ILE | GLN | ||||
| 13 | GLU | VAL | ASP | GLU | PHE | LEU | LEU | ARG | LEU | SER | ||||
| 14 | LYS | LEU | THR | LYS | GLU | ASP | GLU | GLN | GLN | GLN | ||||
| 15 | ALA | LEU | GLN | ASP | ILE | ALA | SER | ARG | CYS | THR | ||||
| 16 | ALA | ASN | ASP | LEU | LYS | CYS | ILE | ILE | ARG | LEU | ||||
| 17 | ILE | LYS | HIS | ASP | LEU | LYS | MET | ASN | SER | GLY | ||||
| 18 | ALA | LYS | HIS | VAL | LEU | ASP | ALA | LEU | ASP | PRO | ||||
| 19 | ASN | ALA | TYR | GLU | ALA | PHE | LYS | ALA | SER | ARG | ||||
| 20 | ASN | LEU | GLN | ASP | VAL | VAL | GLU | ARG | VAL | LEU | ||||
| 21 | HIS | ASN | ALA | GLN | GLU | VAL | GLU | LYS | GLU | PRO | ||||
| 22 | GLY | GLN | ARG | ARG | ALA | LEU | SER | VAL | GLN | ALA | ||||
| 23 | SER | LEU |
Samples:
2H-13C-15N-LIG3DBD: LIG3DBD, [U-13C; U-15N; U-2H], 0.35 mM; MES 20 mM
15N-LIG3DBD: LIG3DBD, [U-13C; U-15N; U-2H], 0.69 mM; MES 20 mM
LIG3DBD_1: ionic strength: 0.008 M; pH: 6.000; pressure: 1.000 atm; temperature: 298.000 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D HNCA | 2H-13C-15N-LIG3DBD | isotropic | LIG3DBD_1 |
| 3D HNCO | 2H-13C-15N-LIG3DBD | isotropic | LIG3DBD_1 |
| 3D HNCACB | 2H-13C-15N-LIG3DBD | isotropic | LIG3DBD_1 |
| 3D HN(CO)CA | 2H-13C-15N-LIG3DBD | isotropic | LIG3DBD_1 |
| 8 (HNcaCO) | 2H-13C-15N-LIG3DBD | isotropic | LIG3DBD_1 |
| 6 (H[N[co[{CA|ca[C]}]]]) | 2H-13C-15N-LIG3DBD | isotropic | LIG3DBD_1 |
| 2D 1H-15N HSQC/HMQC | 15N-LIG3DBD | isotropic | LIG3DBD_1 |
Software:
CcpNmr_Analysis v2.4, CCPN - Analysis
NMR spectrometers:
- Bruker AvanceIII 950 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts