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Biological Magnetic Resonance Data Bank


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BMRB Entry 27243

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Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR27243
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Title: RPT1 region of INI1/SNF5/SMARCB1_HUMAN - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

Deposition date: 2017-09-01 Original release date: 2017-10-03

Authors: Girvin, Mark; Cahill, Sean; Harris, RIchard; Cowburn, David; Spira, Menachem; Wu, Xuhong; Prakash, Rajesh; Brenowitz, Michael; Almo, Steven; Kalpana, Ganjam

Citation: Girvin, Mark; Cahill, Sean; Harris, RIchard; Cowburn, David; Spira, Menachem; Wu, Xuhong; Prakash, Rajesh; Brenowitz, Michael; Almo, Steven; Kalpana, Ganjam. "RPT1 region of INI1/SNF5/SMARCB1_HUMAN - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1"  .

Assembly members:
Rpt1-ini1, polymer, 83 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: sumo

Entity Sequences (FASTA):
Rpt1-ini1: PEVLVPIRLDMEIDGQKLRD AFTWNMNEKLMTPEMFSEIL CDDLDLNPLTFVPAIASAIR QQIESYPTDSILEDQSDQRV IIK

Data sets:
Data typeCount
13C chemical shifts387
15N chemical shifts86
1H chemical shifts627

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Rpt1/ini11

Entities:

Entity 1, Rpt1/ini1 83 residues - Formula weight is not available

1   PROGLUVALLEUVALPROILEARGLEUASP
2   METGLUILEASPGLYGLNLYSLEUARGASP
3   ALAPHETHRTRPASNMETASNGLULYSLEU
4   METTHRPROGLUMETPHESERGLUILELEU
5   CYSASPASPLEUASPLEUASNPROLEUTHR
6   PHEVALPROALAILEALASERALAILEARG
7   GLNGLNILEGLUSERTYRPROTHRASPSER
8   ILELEUGLUASPGLNSERASPGLNARGVAL
9   ILEILELYS

Samples:

sample_1: Rpt1/ini1, [U-95% 13C; U-95% 15N], 250 uM; sodium phosphate 10 mM; sodium chloride 150 mM; EDTA 1 mM; TCEP 5 mM; TSP 0.01 ± 0.01 mM

sample_conditions_1: ionic strength: 0.16 M; pH: 6.8; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aliphaticsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D 1H-13C NOESY aromaticsample_1isotropicsample_conditions_1
3D HCCH-COSYsample_1isotropicsample_conditions_1

Software:

ARIA, Linge, O'Donoghue and Nilges - data analysis

NMR spectrometers:

  • Agilent INOVA 600 MHz
  • Bruker Avance 900 MHz

Related Database Links:

Uniprot Q12824
AlphaFold Q9UBH2

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts