BMRB Entry 27262
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27262
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: '1H, 13C and 15N Chemical shift assignment for double stranded RNA Binding Domain 1 of Trans Activation Response element (TAR) RNA Binding protein 2' PubMed: 29445910
Deposition date: 2017-09-23 Original release date: 2018-03-08
Authors: Chugh, Jeetender; Paithankar, Harshad; Sharma, Shilpy; Naglekar, Amit; Jadhav, Pankaj
Citation: Paithankar, Harshad; Jadhav, Pankaj; Naglekar, Amit; Sharma, Shilpy; Chugh, Jeetender. "1H, 13C and 15N resonance assignment of domain 1 of trans-activation response element (TAR) RNA binding protein isoform 1 (TRBP2) and its comparison with that of isoform 2 (TRBP1)" Biomol. NMR Assign. 12, 189-194 (2018).
Assembly members:
dsRBD1_of_TAR_RNA_Binding_Protein_2, polymer, 108 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pSV272
Entity Sequences (FASTA):
dsRBD1_of_TAR_RNA_Binding_Protein_2: GGAMSEEEQGSGTTTGCGLP
SIEQMLAANPGKTPISLLQE
YGTRIGKTPVYDLLKAEGQA
HQPNFTFRVTVGDTSCTGQG
PSKKAAKHKAAEVALKHLKG
GSMLEPAL
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 225 |
15N chemical shifts | 97 |
1H chemical shifts | 290 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | dsRBD1 of TAR RNA Binding Protein 2 | 1 |
Entities:
Entity 1, dsRBD1 of TAR RNA Binding Protein 2 108 residues - Formula weight is not available
1 | GLY | GLY | ALA | MET | SER | GLU | GLU | GLU | GLN | GLY | ||||
2 | SER | GLY | THR | THR | THR | GLY | CYS | GLY | LEU | PRO | ||||
3 | SER | ILE | GLU | GLN | MET | LEU | ALA | ALA | ASN | PRO | ||||
4 | GLY | LYS | THR | PRO | ILE | SER | LEU | LEU | GLN | GLU | ||||
5 | TYR | GLY | THR | ARG | ILE | GLY | LYS | THR | PRO | VAL | ||||
6 | TYR | ASP | LEU | LEU | LYS | ALA | GLU | GLY | GLN | ALA | ||||
7 | HIS | GLN | PRO | ASN | PHE | THR | PHE | ARG | VAL | THR | ||||
8 | VAL | GLY | ASP | THR | SER | CYS | THR | GLY | GLN | GLY | ||||
9 | PRO | SER | LYS | LYS | ALA | ALA | LYS | HIS | LYS | ALA | ||||
10 | ALA | GLU | VAL | ALA | LEU | LYS | HIS | LEU | LYS | GLY | ||||
11 | GLY | SER | MET | LEU | GLU | PRO | ALA | LEU |
Samples:
sample_1: dsRBD1 of TAR RNA Binding Protein 2, [U-100% 13C; U-100% 15N], 800 uM; sodium phosphate 10 mM; sodium chloride 100 mM; EDTA 1 mM; DTT 1 mM; D2O, [U-100% 2H], 5%
sample_2: dsRBD1 of TAR RNA Binding Protein 2, [U-100% 15N], 800 uM; sodium phosphate 10 mM; sodium chloride 100 mM; EDTA 1 mM; DTT 1 mM; D2O, [U-100% 2H], 5%
sample_conditions_1: ionic strength: 100 mM; pH: 6.4; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
3D HNCA | sample_1 | isotropic | sample_conditions_1 |
3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
3D HNN | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N TOCSY | sample_2 | isotropic | sample_conditions_1 |
Software:
TOPSPIN v3.2, Bruker Biospin - collection
NMR spectrometers:
- Bruker Avance 600 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts