BMRB Entry 27401
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR27401
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Title: Backbone assignment of Dynein Light Intermediate Chain 1 C-terminal domain (LIC1 Cterminal)
Deposition date: 2018-02-12 Original release date: 2019-01-02
Authors: Henen, Morkos; Beat, Vogeli
Citation: Henen, Morkos; Beat, Vogeli. "Dynein LIC1 C-terminal Domain backbone assignment. IDP by NMR" Pos Biology ., .-..
Assembly members:
LIC_C_terminal, polymer, 150 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX-6P-1
Entity Sequences (FASTA):
LIC_C_terminal: GPWPTAAGRPVDASPRVPGG
SPRTPNRSVSSNVASVSPIP
AGSKKIDPNMKAGATSEGVL
ANFFNSLLSKKTGSPGGPGV
SGGSPAGGAGGGSSGLPPST
KKSGQKPVLDVHAELDRITR
KPVTVSPTTPTSPTEGEASG
SGSGHHHHHH
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 273 |
15N chemical shifts | 105 |
1H chemical shifts | 105 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | Single polypeptide IDP | 1 |
Entities:
Entity 1, Single polypeptide IDP 150 residues - Formula weight is not available
1 | GLY | PRO | TRP | PRO | THR | ALA | ALA | GLY | ARG | PRO | |
2 | VAL | ASP | ALA | SER | PRO | ARG | VAL | PRO | GLY | GLY | |
3 | SER | PRO | ARG | THR | PRO | ASN | ARG | SER | VAL | SER | |
4 | SER | ASN | VAL | ALA | SER | VAL | SER | PRO | ILE | PRO | |
5 | ALA | GLY | SER | LYS | LYS | ILE | ASP | PRO | ASN | MET | |
6 | LYS | ALA | GLY | ALA | THR | SER | GLU | GLY | VAL | LEU | |
7 | ALA | ASN | PHE | PHE | ASN | SER | LEU | LEU | SER | LYS | |
8 | LYS | THR | GLY | SER | PRO | GLY | GLY | PRO | GLY | VAL | |
9 | SER | GLY | GLY | SER | PRO | ALA | GLY | GLY | ALA | GLY | |
10 | GLY | GLY | SER | SER | GLY | LEU | PRO | PRO | SER | THR | |
11 | LYS | LYS | SER | GLY | GLN | LYS | PRO | VAL | LEU | ASP | |
12 | VAL | HIS | ALA | GLU | LEU | ASP | ARG | ILE | THR | ARG | |
13 | LYS | PRO | VAL | THR | VAL | SER | PRO | THR | THR | PRO | |
14 | THR | SER | PRO | THR | GLU | GLY | GLU | ALA | SER | GLY | |
15 | SER | GLY | SER | GLY | HIS | HIS | HIS | HIS | HIS | HIS |
Samples:
sample_1: LIC C terminal, [U-100% 13C; U-100% 15N], 370 uM; D2O 5%; sodium phosphate 50 mM; sodium chloride 150 mM
sample_conditions_1: ionic strength: 150 mM; pH: 6.5; pressure: 1 atm; temperature: 273 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
Software:
SPARKY, Goddard - data analysis
NMR spectrometers:
- Varian INOVA 900 MHz
- Varian INOVA 600 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts