BMRB Entry 27682

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27682

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Backbone amide and AILV methyl chemical shift assignments for H2-Ld, a mouse class I major histocompatibility molecule heavy chain
Deposition date:
2018-11-05
Original release date:
2020-02-28
Authors:
Overall, Sarah
Citation:

Citation: McShan, Andrew; Devlin, Christine; Overall, Sarah; Park, Jihye; Toor, Jugmohit; Moschidi, Danai; Flores-Solis, David; Choi, Hannah; Tripathi, Sarvind; Procko, Erik; Sgourakis, Nikolaos. "Molecular determinants of chaperone interactions on MHC-I for folding and antigen repertoire selection"  Proc. Natl. Acad. Sci. U.S.A. 116, 25602-25613 (2019).
PubMed: 31796585

Assembly members:

Assembly members:
H-2Ld, polymer, 277 residues, Formula weight is not available
hb2m, polymer, 99 residues, Formula weight is not available
NIH_peptide, polymer, 9 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET

Entity Sequences (FASTA):

Entity Sequences (FASTA):
H-2Ld: MPHSMRYFETAVSRPGLGEP RYISVGYVDNKEFVRFDSDA ENPRYEPQAPWMEQEGPEYW ERITQIAKGQEQWFRVNLRT LLGYYNQSAGGTHTLQWMYG CDVGSDGRLLRGYEQFAYDG CDYIALNEDLKTWTAADMAA QITRRKWEQAGAAEYYRAYL EGECVEWLHRYLKNGNATLL RTDSPKAHVTHHPRSKGEVT LRCWALGFYPADITLTWQLN GEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCR VYHEGLPEPLTLRWEPP
hb2m: IQRTPKIQVYSRHPAENGKS NFLNCYVSGFHPSDIEVDLL KNGERIEKVEHSDLSFSKDW SFYLLYYTEFTPTEKDEYAC RVNHVTLSQPKIVKWDRDM
NIH_peptide: YPNVNIHNF

Data sets:
Data typeCount
13C chemical shifts765
15N chemical shifts235
1H chemical shifts464

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1H-2Ld1
2hb2m2
3NIH3

Entities:

Entity 1, H-2Ld 277 residues - Formula weight is not available

1   METPROHISSERMETARGTYRPHEGLUTHR
2   ALAVALSERARGPROGLYLEUGLYGLUPRO
3   ARGTYRILESERVALGLYTYRVALASPASN
4   LYSGLUPHEVALARGPHEASPSERASPALA
5   GLUASNPROARGTYRGLUPROGLNALAPRO
6   TRPMETGLUGLNGLUGLYPROGLUTYRTRP
7   GLUARGILETHRGLNILEALALYSGLYGLN
8   GLUGLNTRPPHEARGVALASNLEUARGTHR
9   LEULEUGLYTYRTYRASNGLNSERALAGLY
10   GLYTHRHISTHRLEUGLNTRPMETTYRGLY
11   CYSASPVALGLYSERASPGLYARGLEULEU
12   ARGGLYTYRGLUGLNPHEALATYRASPGLY
13   CYSASPTYRILEALALEUASNGLUASPLEU
14   LYSTHRTRPTHRALAALAASPMETALAALA
15   GLNILETHRARGARGLYSTRPGLUGLNALA
16   GLYALAALAGLUTYRTYRARGALATYRLEU
17   GLUGLYGLUCYSVALGLUTRPLEUHISARG
18   TYRLEULYSASNGLYASNALATHRLEULEU
19   ARGTHRASPSERPROLYSALAHISVALTHR
20   HISHISPROARGSERLYSGLYGLUVALTHR
21   LEUARGCYSTRPALALEUGLYPHETYRPRO
22   ALAASPILETHRLEUTHRTRPGLNLEUASN
23   GLYGLUGLULEUTHRGLNASPMETGLULEU
24   VALGLUTHRARGPROALAGLYASPGLYTHR
25   PHEGLNLYSTRPALASERVALVALVALPRO
26   LEUGLYLYSGLUGLNASNTYRTHRCYSARG
27   VALTYRHISGLUGLYLEUPROGLUPROLEU
28   THRLEUARGTRPGLUPROPRO

Entity 2, hb2m 99 residues - Formula weight is not available

1   ILEGLNARGTHRPROLYSILEGLNVALTYR
2   SERARGHISPROALAGLUASNGLYLYSSER
3   ASNPHELEUASNCYSTYRVALSERGLYPHE
4   HISPROSERASPILEGLUVALASPLEULEU
5   LYSASNGLYGLUARGILEGLULYSVALGLU
6   HISSERASPLEUSERPHESERLYSASPTRP
7   SERPHETYRLEULEUTYRTYRTHRGLUPHE
8   THRPROTHRGLULYSASPGLUTYRALACYS
9   ARGVALASNHISVALTHRLEUSERGLNPRO
10   LYSILEVALLYSTRPASPARGASPMET

Entity 3, NIH 9 residues - Formula weight is not available

1   TYRPROASNVALASNILEHISASNPHE

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks