BMRB Entry 27925

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR27925

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Title:
NMR assignments of capsid protrusion domain of dragon grouper nervous necrosis virus
Deposition date:
2019-05-26
Original release date:
2020-02-11
Authors:
Sterbova, Petra; Wu, Danny; Lou, Yuan-Chao; Tzou, Der-Lii
Citation:

Citation: Sterbova, Petra; Wu, Danny; Lou, Yuan-Chao; Wang, Chun-Hsiung; Chang, Wei-Hau; Tzou, Der-Lii. "1H, 13C, and 15N resonance assignments of the capsid protrusion domain of dragon grouper nervous necrosis virus"  Biomol. NMR Assignments 14, 63-66 (2020).
PubMed: 31848940

Assembly members:

Assembly members:
Protrusion_domain, polymer, 125 residues, 13809.3 Da.

Natural source:

Natural source:   Common Name: Dragon grouper nervous necrosis virus   Taxonomy ID: 292633   Superkingdom: virus   Kingdom: not available   Genus/species: betanodavirus not available

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pETDuet

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Protrusion_domain: TPEETTAPIMTQGSLYNDSL STNDFKSILLGSTPLDIAPD GAVFQLDRPLSIDYSLGTGD VDRAVYWHLKKFAGNAGTPA GWFRWGIWDNFNKTFTDGVA YYSDEQPRQILLPVGTVCTR VDSEN

Data sets:
Data typeCount
13C chemical shifts552
15N chemical shifts127
1H chemical shifts843

Additional metadata:

  • Assembly
  • Samples and Experiments
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Protrusio domain monomer1

Entities:

Entity 1, Protrusio domain monomer 125 residues - 13809.3 Da.

This is the protrusion domain of Dragon grouper nervous necrosis virus coat protein

1   THRPROGLUGLUTHRTHRALAPROILEMET
2   THRGLNGLYSERLEUTYRASNASPSERLEU
3   SERTHRASNASPPHELYSSERILELEULEU
4   GLYSERTHRPROLEUASPILEALAPROASP
5   GLYALAVALPHEGLNLEUASPARGPROLEU
6   SERILEASPTYRSERLEUGLYTHRGLYASP
7   VALASPARGALAVALTYRTRPHISLEULYS
8   LYSPHEALAGLYASNALAGLYTHRPROALA
9   GLYTRPPHEARGTRPGLYILETRPASPASN
10   PHEASNLYSTHRPHETHRASPGLYVALALA
11   TYRTYRSERASPGLUGLNPROARGGLNILE
12   LEULEUPROVALGLYTHRVALCYSTHRARG
13   VALASPSERGLUASN

Related Database Links:

UNP Q9E6H7
AlphaFold Q9E6H7

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks