BMRB Entry 27961

Name: NMR resonance assignments of the hazelnut allergen isoform Cor a 1.0402
Published: 2019-11-08

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PDB ID: 6y3i
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27961
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR resonance assignments of the hazelnut allergen isoform Cor a 1.0402

Deposition date:

2019-06-27

Original release date:

2019-11-08

Authors:

Fuehrer, Sebastian; Zeindl, Ricarda; Tollinger, Martin

Citation:

Citation: Fuehrer, Sebastian; Zeindl, Ricarda; Tollinger, Martin. "NMR resonance assignments of the four isoforms of the hazelnut allergen Cor a 1.04" Biomol. NMR Assignments 14, 45-49 (2020).
PubMed: 31691092

Assembly members:

Assembly members:
Cor_a_1.0402, polymer, 160 residues, Formula weight is not available

Natural source:

Natural source: Common Name: European hazelnut Taxonomy ID: 13451 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Corylus avellana

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28b(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Cor_a_1.0402: GVFSYEDEATSVIPPARLFK SFVLDADNLIPKVAPQHFTG AENLEGNGGPGTIKKITFAE GSEFKYMKHKVEEIDHANFK YCYSIIEGGPLGHTLEKISY EIKMAAAPHGGGSILKITSK YHTKGNASISEEEIKAGKEK AAGLFKAVEAYLLAHPDTYC

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	665
15N chemical shifts	156
1H chemical shifts	998

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Cor a 1.0402	1

Entities:

Entity 1, Cor a 1.0402 160 residues - Formula weight is not available

1	GLY	VAL	PHE	SER	TYR	GLU	ASP	GLU	ALA	THR
2	SER	VAL	ILE	PRO	PRO	ALA	ARG	LEU	PHE	LYS
3	SER	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU	ILE
4	PRO	LYS	VAL	ALA	PRO	GLN	HIS	PHE	THR	GLY
5	ALA	GLU	ASN	LEU	GLU	GLY	ASN	GLY	GLY	PRO
6	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	ALA	GLU
7	GLY	SER	GLU	PHE	LYS	TYR	MET	LYS	HIS	LYS
8	VAL	GLU	GLU	ILE	ASP	HIS	ALA	ASN	PHE	LYS
9	TYR	CYS	TYR	SER	ILE	ILE	GLU	GLY	GLY	PRO
10	LEU	GLY	HIS	THR	LEU	GLU	LYS	ILE	SER	TYR
11	GLU	ILE	LYS	MET	ALA	ALA	ALA	PRO	HIS	GLY
12	GLY	GLY	SER	ILE	LEU	LYS	ILE	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASN	ALA	SER	ILE	SER
14	GLU	GLU	GLU	ILE	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	GLY	LEU	PHE	LYS	ALA	VAL	GLU	ALA
16	TYR	LEU	LEU	ALA	HIS	PRO	ASP	THR	TYR	CYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC NH2 only	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_2	isotropic	sample_conditions_1
3D (H)CC(CO)NH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 27961

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	GLY	VAL	PHE	SER	TYR	GLU	ASP	GLU	ALA	THR
2	SER	VAL	ILE	PRO	PRO	ALA	ARG	LEU	PHE	LYS
3	SER	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU	ILE
4	PRO	LYS	VAL	ALA	PRO	GLN	HIS	PHE	THR	GLY
5	ALA	GLU	ASN	LEU	GLU	GLY	ASN	GLY	GLY	PRO
6	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	ALA	GLU
7	GLY	SER	GLU	PHE	LYS	TYR	MET	LYS	HIS	LYS
8	VAL	GLU	GLU	ILE	ASP	HIS	ALA	ASN	PHE	LYS
9	TYR	CYS	TYR	SER	ILE	ILE	GLU	GLY	GLY	PRO
10	LEU	GLY	HIS	THR	LEU	GLU	LYS	ILE	SER	TYR
11	GLU	ILE	LYS	MET	ALA	ALA	ALA	PRO	HIS	GLY
12	GLY	GLY	SER	ILE	LEU	LYS	ILE	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASN	ALA	SER	ILE	SER
14	GLU	GLU	GLU	ILE	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	GLY	LEU	PHE	LYS	ALA	VAL	GLU	ALA
16	TYR	LEU	LEU	ALA	HIS	PRO	ASP	THR	TYR	CYS

1	GLY	VAL	PHE	SER	TYR	GLU	ASP	GLU	ALA	THR
2	SER	VAL	ILE	PRO	PRO	ALA	ARG	LEU	PHE	LYS
3	SER	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU	ILE
4	PRO	LYS	VAL	ALA	PRO	GLN	HIS	PHE	THR	GLY
5	ALA	GLU	ASN	LEU	GLU	GLY	ASN	GLY	GLY	PRO
6	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	ALA	GLU
7	GLY	SER	GLU	PHE	LYS	TYR	MET	LYS	HIS	LYS
8	VAL	GLU	GLU	ILE	ASP	HIS	ALA	ASN	PHE	LYS
9	TYR	CYS	TYR	SER	ILE	ILE	GLU	GLY	GLY	PRO
10	LEU	GLY	HIS	THR	LEU	GLU	LYS	ILE	SER	TYR
11	GLU	ILE	LYS	MET	ALA	ALA	ALA	PRO	HIS	GLY
12	GLY	GLY	SER	ILE	LEU	LYS	ILE	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASN	ALA	SER	ILE	SER
14	GLU	GLU	GLU	ILE	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	GLY	LEU	PHE	LYS	ALA	VAL	GLU	ALA
16	TYR	LEU	LEU	ALA	HIS	PRO	ASP	THR	TYR	CYS

1	GLY	VAL	PHE	SER	TYR	GLU	ASP	GLU	ALA	THR
2	SER	VAL	ILE	PRO	PRO	ALA	ARG	LEU	PHE	LYS
3	SER	PHE	VAL	LEU	ASP	ALA	ASP	ASN	LEU	ILE
4	PRO	LYS	VAL	ALA	PRO	GLN	HIS	PHE	THR	GLY
5	ALA	GLU	ASN	LEU	GLU	GLY	ASN	GLY	GLY	PRO
6	GLY	THR	ILE	LYS	LYS	ILE	THR	PHE	ALA	GLU
7	GLY	SER	GLU	PHE	LYS	TYR	MET	LYS	HIS	LYS
8	VAL	GLU	GLU	ILE	ASP	HIS	ALA	ASN	PHE	LYS
9	TYR	CYS	TYR	SER	ILE	ILE	GLU	GLY	GLY	PRO
10	LEU	GLY	HIS	THR	LEU	GLU	LYS	ILE	SER	TYR
11	GLU	ILE	LYS	MET	ALA	ALA	ALA	PRO	HIS	GLY
12	GLY	GLY	SER	ILE	LEU	LYS	ILE	THR	SER	LYS
13	TYR	HIS	THR	LYS	GLY	ASN	ALA	SER	ILE	SER
14	GLU	GLU	GLU	ILE	LYS	ALA	GLY	LYS	GLU	LYS
15	ALA	ALA	GLY	LEU	PHE	LYS	ALA	VAL	GLU	ALA
16	TYR	LEU	LEU	ALA	HIS	PRO	ASP	THR	TYR	CYS