BMRB Entry 30044

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PDB ID: 5izp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30044
MolProbity Validation Chart

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Title:
Solution Structure of DNA Dodecamer with 8-oxoguanine at 10th Position
Deposition date:
2016-03-25
Original release date:
2016-07-28
Authors:
Gruber, D.; Hoppins, J.; Miears, H.; Kiryutin, A.; Kasymov, R.; Yurkovskaya, A.; Zharkov, D.; Smirnov, S.
Citation:

Citation: Gruber, David; Toner, Joanna; Miears, Heather; Shernyukov, Andrey; Kiryutin, Alexey; Lomzov, Alexander; Endutkin, Anton; Grin, Inga; Petrova, Darya; Kupryushkin, Maxim; Yurkovskaya, Alexandra; Johnson, Eric; Okon, Mark; Bagryanskaya, Elena; Zharkov, Dmitry; Smirnov, Serge. "Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation"  Nucleic Acids Res. 46, 10827-10839 (2018).
PubMed: 30289469

Assembly members:

Assembly members:
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3'), polymer, 12 residues, 3679.392 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: 32630   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3'): CGCGAATTCXCG

Data typeCount
1H chemical shifts186
31P chemical shifts14

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_1, chain 11
2entity_1, chain 21

Entities:

Entity 1, entity_1, chain 1 12 residues - 3679.392 Da.

1   DCDGDCDGDADADTDTDC8OG
2   DCDG