BMRB Entry 30907

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PDB ID: 7msv
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30907
MolProbity Validation Chart

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Title:
Solution Structure of Berberine Bound to a dGMP Fill-in G-Quadruplex in the PDGFR-b Promoter
Deposition date:
2021-05-12
Original release date:
2022-04-11
Authors:
Wang, K.; Dickerhoff, J.; Yang, D.
Citation:

Citation: Wang, K.; Dickerhoff, J.; Yang, D.. "Solution Structure of Ternary Complex of Berberine Bound to a dGMP-Fill-In Vacancy G-Quadruplex Formed in the PDGFR-beta Promoter"  J. Am. Chem. Soc. 143, 16549-16555 (2021).
PubMed: 34586799

Assembly members:

Assembly members:
entity_1, polymer, 19 residues, 6009.886 Da.
entity_DGP, non-polymer, 347.221 Da.
entity_BER, non-polymer, 336.361 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: AAGGGAGGGCGGCGGGACA

Data sets:
Data typeCount
1H chemical shifts194

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1unit_11
2unit_22
3unit_33
4unit_43

Entities:

Entity 1, unit_1 19 residues - 6009.886 Da.

1   DADADGDGDGDADGDGDGDC
2   DGDGDCDGDGDGDADCDA

Entity 2, unit_2 - C10 H14 N5 O7 P - 347.221 Da.

1   DGP

Entity 3, unit_3 - C20 H18 N O4 - 336.361 Da.

1   BER