BMRB Entry 31060

Name: Structure of N-terminal of Schistosoma japonicum asparaginyl-tRNA synthetase
Published: 2023-08-29

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PDB ID: 8fa3
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR31060
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of N-terminal of Schistosoma japonicum asparaginyl-tRNA synthetase

Deposition date:

2022-11-25

Original release date:

2023-08-29

Authors:

Peck, Y.; Daly, N.; Mobli, M.

Citation:

Citation: Peck, Yoshimi; Pickering, Darren; Mobli, Mehdi; Liddell, Michael; Wilson, David; Ruscher, Roland; Ryan, Stephanie; Buitrago, Geraldine; McHugh, Connor; Love, Nicholas; Pinlac, Theresa; Haertlein, Michael; Kron, Michael; Loukas, Alex; Daly, Norelle. "Solution structure of the N-terminal extension domain of a Schistosoma japonicum asparaginyl-tRNA synthetase" J. Biomol. Struct. Dyn. ., 1-11 (2023).
PubMed: 37572327

Assembly members:

Assembly members:
entity_1, polymer, 120 residues, 13576.252 Da.

Natural source:

Natural source: Common Name: Schistosoma japonicum Taxonomy ID: 6182 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Schistosoma japonicum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MQIYTSEKRGSDTAGNGTEE APLKTVLQAIVKLDGKIEAD TRIWVDGTGDEMWDVVSKSK LKKATKQYHIQTKKQEKAPH EKIVSYENGDNVNLSEAINV QLTLDTKLPEAKELHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	421
15N chemical shifts	120
1H chemical shifts	632

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 120 residues - 13576.252 Da.

1	MET	GLN	ILE	TYR	THR	SER	GLU	LYS	ARG	GLY
2	SER	ASP	THR	ALA	GLY	ASN	GLY	THR	GLU	GLU
3	ALA	PRO	LEU	LYS	THR	VAL	LEU	GLN	ALA	ILE
4	VAL	LYS	LEU	ASP	GLY	LYS	ILE	GLU	ALA	ASP
5	THR	ARG	ILE	TRP	VAL	ASP	GLY	THR	GLY	ASP
6	GLU	MET	TRP	ASP	VAL	VAL	SER	LYS	SER	LYS
7	LEU	LYS	LYS	ALA	THR	LYS	GLN	TYR	HIS	ILE
8	GLN	THR	LYS	LYS	GLN	GLU	LYS	ALA	PRO	HIS
9	GLU	LYS	ILE	VAL	SER	TYR	GLU	ASN	GLY	ASP
10	ASN	VAL	ASN	LEU	SER	GLU	ALA	ILE	ASN	VAL
11	GLN	LEU	THR	LEU	ASP	THR	LYS	LEU	PRO	GLU
12	ALA	LYS	GLU	LEU	HIS	HIS	HIS	HIS	HIS	HIS

Name	Sample	Sample state	Sample conditions
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
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SPARKY: Backbone or all simulated peaks

BMRB Entry 31060

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	MET	GLN	ILE	TYR	THR	SER	GLU	LYS	ARG	GLY
2	SER	ASP	THR	ALA	GLY	ASN	GLY	THR	GLU	GLU
3	ALA	PRO	LEU	LYS	THR	VAL	LEU	GLN	ALA	ILE
4	VAL	LYS	LEU	ASP	GLY	LYS	ILE	GLU	ALA	ASP
5	THR	ARG	ILE	TRP	VAL	ASP	GLY	THR	GLY	ASP
6	GLU	MET	TRP	ASP	VAL	VAL	SER	LYS	SER	LYS
7	LEU	LYS	LYS	ALA	THR	LYS	GLN	TYR	HIS	ILE
8	GLN	THR	LYS	LYS	GLN	GLU	LYS	ALA	PRO	HIS
9	GLU	LYS	ILE	VAL	SER	TYR	GLU	ASN	GLY	ASP
10	ASN	VAL	ASN	LEU	SER	GLU	ALA	ILE	ASN	VAL
11	GLN	LEU	THR	LEU	ASP	THR	LYS	LEU	PRO	GLU
12	ALA	LYS	GLU	LEU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	GLN	ILE	TYR	THR	SER	GLU	LYS	ARG	GLY
2	SER	ASP	THR	ALA	GLY	ASN	GLY	THR	GLU	GLU
3	ALA	PRO	LEU	LYS	THR	VAL	LEU	GLN	ALA	ILE
4	VAL	LYS	LEU	ASP	GLY	LYS	ILE	GLU	ALA	ASP
5	THR	ARG	ILE	TRP	VAL	ASP	GLY	THR	GLY	ASP
6	GLU	MET	TRP	ASP	VAL	VAL	SER	LYS	SER	LYS
7	LEU	LYS	LYS	ALA	THR	LYS	GLN	TYR	HIS	ILE
8	GLN	THR	LYS	LYS	GLN	GLU	LYS	ALA	PRO	HIS
9	GLU	LYS	ILE	VAL	SER	TYR	GLU	ASN	GLY	ASP
10	ASN	VAL	ASN	LEU	SER	GLU	ALA	ILE	ASN	VAL
11	GLN	LEU	THR	LEU	ASP	THR	LYS	LEU	PRO	GLU
12	ALA	LYS	GLU	LEU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	GLN	ILE	TYR	THR	SER	GLU	LYS	ARG	GLY
2	SER	ASP	THR	ALA	GLY	ASN	GLY	THR	GLU	GLU
3	ALA	PRO	LEU	LYS	THR	VAL	LEU	GLN	ALA	ILE
4	VAL	LYS	LEU	ASP	GLY	LYS	ILE	GLU	ALA	ASP
5	THR	ARG	ILE	TRP	VAL	ASP	GLY	THR	GLY	ASP
6	GLU	MET	TRP	ASP	VAL	VAL	SER	LYS	SER	LYS
7	LEU	LYS	LYS	ALA	THR	LYS	GLN	TYR	HIS	ILE
8	GLN	THR	LYS	LYS	GLN	GLU	LYS	ALA	PRO	HIS
9	GLU	LYS	ILE	VAL	SER	TYR	GLU	ASN	GLY	ASP
10	ASN	VAL	ASN	LEU	SER	GLU	ALA	ILE	ASN	VAL
11	GLN	LEU	THR	LEU	ASP	THR	LYS	LEU	PRO	GLU
12	ALA	LYS	GLU	LEU	HIS	HIS	HIS	HIS	HIS	HIS