BMRB Entry 34191
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR34191
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Title: solution NMR structure of EB1 C terminus (191-260) PubMed: 29138501
Deposition date: 2017-11-01 Original release date: 2019-03-28
Authors: Barsukov, I.; Almeida, T.
Citation: Almeida, T.; Carnell, A.; Barsukov, I.; Berry, N.. "Targeting SxIP-EB1 interaction: An integrated approach to the discovery of small molecule modulators of dynamic binding sites." Sci. Rep. 7, 15533-15533 (2017).
Assembly members:
entity_1, polymer, 70 residues, 8049.979 Da.
Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: DEAAELMQQVKVLKLTVEDL
EKERDFYFGKLRNIELICQE
NEGENDPVLQRIVDILYATD
EGFVIPDEGG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 558 |
| 15N chemical shifts | 146 |
| 1H chemical shifts | 968 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1, 1 | 1 |
| 2 | entity_1, 2 | 1 |
Entities:
Entity 1, entity_1, 1 70 residues - 8049.979 Da.
| 1 | ASP | GLU | ALA | ALA | GLU | LEU | MET | GLN | GLN | VAL | |
| 2 | LYS | VAL | LEU | LYS | LEU | THR | VAL | GLU | ASP | LEU | |
| 3 | GLU | LYS | GLU | ARG | ASP | PHE | TYR | PHE | GLY | LYS | |
| 4 | LEU | ARG | ASN | ILE | GLU | LEU | ILE | CYS | GLN | GLU | |
| 5 | ASN | GLU | GLY | GLU | ASN | ASP | PRO | VAL | LEU | GLN | |
| 6 | ARG | ILE | VAL | ASP | ILE | LEU | TYR | ALA | THR | ASP | |
| 7 | GLU | GLY | PHE | VAL | ILE | PRO | ASP | GLU | GLY | GLY |
Samples:
sample_1: End binding protein 1 (EB1), [U-13C; U-15N], 1 mM
sample_conditions_1: ionic strength: 50 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC aliphatic | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC aromatic | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aliphatic | sample_1 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY aromatic | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
Software:
CNS, Brunger A. T. et.al. - refinement
ARIA, Linge, O'Donoghue and Nilges - structure calculation
CcpNMR, CCPN - chemical shift assignment, peak picking
NMR spectrometers:
- Bruker AvanceIII 600 MHz
- Bruker AvanceIII 800 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts