BMRB Entry 34513
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34513
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Title: Solution NMR structure of the oligomerization domain of respiratory syncytial virus phosphoprotein PubMed: 34439894
Deposition date: 2020-04-15 Original release date: 2021-04-23
Authors: Cardone, C.; Bontems, F.; Bardiaux, B.; Sizun, C.
Citation: Cardone, Christophe; Caseau, Claire-Marie; Bardiaux, Benjamin; Thureaux, Aurelien; Galloux, Marie; Bajorek, Monika; Eleouet, Jean-Francois; Litaudon, Marc; Bontems, Francois; Sizun, Christina. "A Structural and Dynamic Analysis of the Partially Disordered Polymerase-Binding Domain in RSV Phosphoprotein" Biomolecules 11, 1225-1225 (2021).
Assembly members:
entity_1, polymer, 45 residues, 4561.035 Da.
Natural source: Common Name: Respiratory syncytial virus Taxonomy ID: 12814 Superkingdom: Viruses Kingdom: not available Genus/species: not available Respiratory syncytial virus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3) Vector: pGEX-P(127-163)
Entity Sequences (FASTA):
entity_1: GSGSGSGSTNDNITARLDRI
DEKLSEILGMLHTLVVASAG
PTSAR
- assigned_chemical_shifts
- spectral_peak_list
| Data type | Count |
| 13C chemical shifts | 166 |
| 15N chemical shifts | 38 |
| 1H chemical shifts | 278 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1, 1 | 1 |
| 2 | entity_1, 2 | 1 |
| 3 | entity_1, 3 | 1 |
| 4 | entity_1, 4 | 1 |
Entities:
Entity 1, entity_1, 1 45 residues - 4561.035 Da.
| 1 | GLY | SER | GLY | SER | GLY | SER | GLY | SER | THR | ASN | ||||
| 2 | ASP | ASN | ILE | THR | ALA | ARG | LEU | ASP | ARG | ILE | ||||
| 3 | ASP | GLU | LYS | LEU | SER | GLU | ILE | LEU | GLY | MET | ||||
| 4 | LEU | HIS | THR | LEU | VAL | VAL | ALA | SER | ALA | GLY | ||||
| 5 | PRO | THR | SER | ALA | ARG |
Samples:
sample_1: Phosphoprotein(127-163) [U-13C; U-15N], [U-13C; U-15N], 600 ± 50 uM; sodium phosphate 20 ± 2 mM; sodium chloride 100 ± 10 mM
sample_2: Phosphoprotein(127-163) [U-13C; U-15N], [U-13C; U-15N], 600 ± 50 uM; sodium phosphate 20 ± 2 mM; sodium chloride 100 ± 10 mM
sample_3: Phosphoprotein(127-163) [U-13C; U-15N], [U-13C; U-15N], 300 ± 30 uM; sodium phosphate 20 ± 2 mM; sodium chloride 100 ± 10 mM; Phosphoprotein(127-163) 300 ± 30 uM
sample_conditions_1: ionic strength: 133 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_2 | isotropic | sample_conditions_1 |
| 2D 1H-15N HSQC | sample_2 | isotropic | sample_conditions_1 |
| 3D HCCH-TOCSY | sample_2 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(COCA)CB | sample_1 | isotropic | sample_conditions_1 |
| 3D 1H-13C NOESY | sample_2 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_2 | isotropic | sample_conditions_1 |
| 1D 1H | sample_2 | isotropic | sample_conditions_1 |
| 3D 1H-15N NOESY-HSQC | sample_1 | isotropic | sample_conditions_1 |
| 1H-13C NOESY-HSQC with 13C/15N filter in F1 | sample_3 | isotropic | sample_conditions_1 |
| 2D 1H-13C HSQC | sample_3 | isotropic | sample_conditions_1 |
Software:
ARIA v2.3, Linge, O'Donoghue and Nilges - refinement, structure calculation
CcpNmr Analysis v2.4, CCPN - chemical shift assignment, peak picking
TALOS-N v4.21, Shen and Bax - data analysis
NMR spectrometers:
- Bruker AVANCE III 600 MHz
- Bruker AVANCE III 800 MHz
- Bruker AVANCE III 950 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts