BMRB Entry 34554
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34554
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Title: NMR solution structure for Tsp1a
Deposition date: 2020-08-24 Original release date: 2021-09-01
Authors: Agwa, A.; Schroeder, C.
Citation: Agwa, A.; Schroeder, C.. "NMR solution structure for Tsp1a" .
Assembly members:
entity_1, polymer, 29 residues, 3400.052 Da.
Natural source: Common Name: spiders Taxonomy ID: 2013936 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Thrixopelma Thrixopelma sp. EUTSP1SVT
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
entity_1: YCQKFLWTCDSERPCCEGLV
CRLWCKINX
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 84 |
15N chemical shifts | 26 |
1H chemical shifts | 200 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | unit_1 | 1 |
Entities:
Entity 1, unit_1 29 residues - 3400.052 Da.
1 | TYR | CYS | GLN | LYS | PHE | LEU | TRP | THR | CYS | ASP | ||||
2 | SER | GLU | ARG | PRO | CYS | CYS | GLU | GLY | LEU | VAL | ||||
3 | CYS | ARG | LEU | TRP | CYS | LYS | ILE | ASN | NH2 |
Samples:
sample_1: entity_1 mM; H2O 90%
sample_2: entity_1 mM; H2O 90%
sample_3: entity_1 mM; H2O 90%
sample_4: entity_1 mM; D2O, [U-2H], 100%
sample_5: entity_1 mM; D2O, [U-2H], 100%
sample_6: entity_1 mM; D2O, [U-2H], 100%
sample_conditions_1: ionic strength: 1 M; pH: 4; pressure: 1 Pa; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
2D 1H-1H NOESY | sample_2 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC aliphatic | sample_4 | isotropic | sample_conditions_1 |
2D 1H-15N HSQC NH2 only | sample_3 | isotropic | sample_conditions_1 |
2D 1H-1H COSY | sample_5 | isotropic | sample_conditions_1 |
Software:
TopSpin, Bruker Biospin - processing
CcpNmr Analysis v2.4.1, CCPN - chemical shift assignment
CYANA v3.97, Guntert, Mumenthaler and Wuthrich - structure calculation
CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement
NMR spectrometers:
- Bruker AVANCE 600 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts