BMRB Entry 34637
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34637
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Title: Oxytocin NMR solution structure PubMed: 34459989
Deposition date: 2021-06-10 Original release date: 2021-10-08
Authors: Shalev, D.; Alshanski, I.; Yitzchaik, S.; Hurevich, M.
Citation: Alshanski, I.; Shalev, D.; Yitzchaik, S.; Hurevich, M.. "Determining the structure and binding mechanism of oxytocin-Cu 2+ complex using paramagnetic relaxation enhancement NMR analysis" J. Biol. Inorg. Chem. 26, 809-815 (2021).
Assembly members:
entity_1, polymer, 10 residues, 1010.188 Da.
entity_CU, non-polymer, 63.546 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
entity_1: CYIQNCPLGX
- assigned_chemical_shifts
- spectral_peak_list
Data type | Count |
1H chemical shifts | 58 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | unit_1 | 1 |
2 | unit_2 | 2 |
Entities:
Entity 1, unit_1 10 residues - 1010.188 Da.
1 | CYS | TYR | ILE | GLN | ASN | CYS | PRO | LEU | GLY | NH2 |
Entity 2, unit_2 - Cu - 63.546 Da.
1 | CU |
Samples:
sample_1: oxytocin 3.3 mM; ammonium acetate buffer 5 mM; D2O, [U-100% 2H], 10 % v/v; H2O 90 % v/v; CuCl2 0.33 mM
sample_conditions_1: ionic strength: 14.9 mM; pH: 6.7 pH*; pressure: 1 atm; temperature: 293.2 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-1H COSY | sample_1 | isotropic | sample_conditions_1 |
2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
2D 1H-1H ROESY | sample_1 | isotropic | sample_conditions_1 |
Software:
TopSpin, Bruker Biospin - collection
NMRFAM-SPARKY v1.470, Lee, W.; Tonelli, M.; Markley, J. L. NMRFAM-SPARKY. - chemical shift assignment, peak picking
CNS, The Xplor-NIH - structure calculation
UCSF Chimera v1.14, UCSF Chimera - data analysis
NMR spectrometers:
- Bruker AVANCE II 500.13 MHz