BMRB Entry 34666

Name: NMR Structure of RgpB C-terminal Domain
Published: 2022-09-21

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PDB ID: 7pq4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34666
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure of RgpB C-terminal Domain

Deposition date:

2021-09-16

Original release date:

2022-09-21

Authors:

Dorgan, B.; Curtis, M.; Garnett, J.

Citation:

Citation: Dorgan, B.; Curtis, M.; Garnett, J.. "NMR structure of RgpB C-terminal Domain" To be published ., .-..

Assembly members:

Assembly members:
entity_1, polymer, 90 residues, 9854.143 Da.

Natural source:

Natural source: Common Name: Porphyromonas gingivalis Taxonomy ID: 837 Superkingdom: Bacteria Kingdom: not available Genus/species: Porphyromonas gingivalis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3) Vector: pET46

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MAHHHHHHVDDDDKMGTSIA DVANDKPYTVAVSGKTITVE SPAAGLTIFDMNGRRVATAK NRMVFEAQNGVYAVRIATEG KTYTEKVIVK

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	353
15N chemical shifts	83
1H chemical shifts	541

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 90 residues - 9854.143 Da.

1	MET	ALA	HIS	HIS	HIS	HIS	HIS	HIS	VAL	ASP
2	ASP	ASP	ASP	LYS	MET	GLY	THR	SER	ILE	ALA
3	ASP	VAL	ALA	ASN	ASP	LYS	PRO	TYR	THR	VAL
4	ALA	VAL	SER	GLY	LYS	THR	ILE	THR	VAL	GLU
5	SER	PRO	ALA	ALA	GLY	LEU	THR	ILE	PHE	ASP
6	MET	ASN	GLY	ARG	ARG	VAL	ALA	THR	ALA	LYS
7	ASN	ARG	MET	VAL	PHE	GLU	ALA	GLN	ASN	GLY
8	VAL	TYR	ALA	VAL	ARG	ILE	ALA	THR	GLU	GLY
9	LYS	THR	TYR	THR	GLU	LYS	VAL	ILE	VAL	LYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_1	isotropic	sample_conditions_1
HBCBCGCDHD	sample_1	isotropic	sample_conditions_1
HBCBCGCDCEHE	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 34666

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	MET	ALA	HIS	HIS	HIS	HIS	HIS	HIS	VAL	ASP
2	ASP	ASP	ASP	LYS	MET	GLY	THR	SER	ILE	ALA
3	ASP	VAL	ALA	ASN	ASP	LYS	PRO	TYR	THR	VAL
4	ALA	VAL	SER	GLY	LYS	THR	ILE	THR	VAL	GLU
5	SER	PRO	ALA	ALA	GLY	LEU	THR	ILE	PHE	ASP
6	MET	ASN	GLY	ARG	ARG	VAL	ALA	THR	ALA	LYS
7	ASN	ARG	MET	VAL	PHE	GLU	ALA	GLN	ASN	GLY
8	VAL	TYR	ALA	VAL	ARG	ILE	ALA	THR	GLU	GLY
9	LYS	THR	TYR	THR	GLU	LYS	VAL	ILE	VAL	LYS

1	MET	ALA	HIS	HIS	HIS	HIS	HIS	HIS	VAL	ASP
2	ASP	ASP	ASP	LYS	MET	GLY	THR	SER	ILE	ALA
3	ASP	VAL	ALA	ASN	ASP	LYS	PRO	TYR	THR	VAL
4	ALA	VAL	SER	GLY	LYS	THR	ILE	THR	VAL	GLU
5	SER	PRO	ALA	ALA	GLY	LEU	THR	ILE	PHE	ASP
6	MET	ASN	GLY	ARG	ARG	VAL	ALA	THR	ALA	LYS
7	ASN	ARG	MET	VAL	PHE	GLU	ALA	GLN	ASN	GLY
8	VAL	TYR	ALA	VAL	ARG	ILE	ALA	THR	GLU	GLY
9	LYS	THR	TYR	THR	GLU	LYS	VAL	ILE	VAL	LYS

1	MET	ALA	HIS	HIS	HIS	HIS	HIS	HIS	VAL	ASP
2	ASP	ASP	ASP	LYS	MET	GLY	THR	SER	ILE	ALA
3	ASP	VAL	ALA	ASN	ASP	LYS	PRO	TYR	THR	VAL
4	ALA	VAL	SER	GLY	LYS	THR	ILE	THR	VAL	GLU
5	SER	PRO	ALA	ALA	GLY	LEU	THR	ILE	PHE	ASP
6	MET	ASN	GLY	ARG	ARG	VAL	ALA	THR	ALA	LYS
7	ASN	ARG	MET	VAL	PHE	GLU	ALA	GLN	ASN	GLY
8	VAL	TYR	ALA	VAL	ARG	ILE	ALA	THR	GLU	GLY
9	LYS	THR	TYR	THR	GLU	LYS	VAL	ILE	VAL	LYS