BMRB Entry 36057

Name: Solution structure of a novel antimicrobial peptide, P1, from jumper ant Myrmecia pilosula
Published: 2019-08-06

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PDB ID: 5x3l
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR36057
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a novel antimicrobial peptide, P1, from jumper ant Myrmecia pilosula

Deposition date:

2017-02-06

Original release date:

2019-08-06

Authors:

Tseng, T.-S., T.; Chen, C.

Citation:

Citation: Tseng, Tien-Sheng; Tsai, Keng-Chang; Chen, Chinpan. "Characterizing the structure-function relationship reveals the mode of action of a novel antimicrobial peptide, P1, from jumper ant Myrmecia pilosula" Mol. Biosyst. 13, 1193-1201 (2017).
PubMed: 28470277

Assembly members:

Assembly members:
entity_1, polymer, 20 residues, 2112.609 Da.

Natural source:

Natural source: Common Name: Jack jumper ant Taxonomy ID: 13618 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Myrmecia pilosula

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GLGSVFGRLARILGRVIPKV

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
15N chemical shifts	17
1H chemical shifts	138

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 20 residues - 2112.609 Da.

1		GLY	LEU	GLY	SER	VAL	PHE	GLY	ARG	LEU	ALA
2		ARG	ILE	LEU	GLY	ARG	VAL	ILE	PRO	LYS	VAL

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 36057

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1		GLY	LEU	GLY	SER	VAL	PHE	GLY	ARG	LEU	ALA
2		ARG	ILE	LEU	GLY	ARG	VAL	ILE	PRO	LYS	VAL

1		GLY	LEU	GLY	SER	VAL	PHE	GLY	ARG	LEU	ALA
2		ARG	ILE	LEU	GLY	ARG	VAL	ILE	PRO	LYS	VAL

1		GLY	LEU	GLY	SER	VAL	PHE	GLY	ARG	LEU	ALA
2		ARG	ILE	LEU	GLY	ARG	VAL	ILE	PRO	LYS	VAL