BMRB Entry 36112

Name: NMR structure of the domain 5 of the E. coli ribosomal protein S1
Published: 2018-07-11

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PDB ID: 5y70
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR36112
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of the domain 5 of the E. coli ribosomal protein S1

Deposition date:

2017-08-16

Original release date:

2018-07-11

Authors:

Lu, Y.; Lim, L.; Song, J.

Citation:

Citation: Lim, Liang Zhong; Ee, Shermaine; Fu, Jing; Tan, Yanming; He, Cynthia; Song, Jianxing. "Kinetoplastid membrane protein-11 adopts a four-helix bundle fold in DPC micelle" FEBS Lett 591, 3793-3804 (2017).
PubMed: 29082514

Assembly members:

Assembly members:
entity_1, polymer, 100 residues, 12071.572 Da.

Natural source:

Natural source: Common Name: Trypanosoma brucei Taxonomy ID: 5702 Superkingdom: Eukaryota Kingdom: not available Genus/species: Trypanosoma brucei

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli K-12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MATTYEEFAAKLDRLDAEFA KKMEEQNKRFFADKPDEATL SPEMKEHYEKFEKMIQEHTD KFNKKMREHSEHFKAKFAEL LEQQKNAQFPGKGSHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	177
15N chemical shifts	89
1H chemical shifts	178

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 100 residues - 12071.572 Da.

1	MET	ALA	THR	THR	TYR	GLU	GLU	PHE	ALA	ALA
2	LYS	LEU	ASP	ARG	LEU	ASP	ALA	GLU	PHE	ALA
3	LYS	LYS	MET	GLU	GLU	GLN	ASN	LYS	ARG	PHE
4	PHE	ALA	ASP	LYS	PRO	ASP	GLU	ALA	THR	LEU
5	SER	PRO	GLU	MET	LYS	GLU	HIS	TYR	GLU	LYS
6	PHE	GLU	LYS	MET	ILE	GLN	GLU	HIS	THR	ASP
7	LYS	PHE	ASN	LYS	LYS	MET	ARG	GLU	HIS	SER
8	GLU	HIS	PHE	LYS	ALA	LYS	PHE	ALA	GLU	LEU
9	LEU	GLU	GLN	GLN	LYS	ASN	ALA	GLN	PHE	PRO
10	GLY	LYS	GLY	SER	HIS	HIS	HIS	HIS	HIS	HIS

Name	Sample	Sample state	Sample conditions
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1

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CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 36112

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	MET	ALA	THR	THR	TYR	GLU	GLU	PHE	ALA	ALA
2	LYS	LEU	ASP	ARG	LEU	ASP	ALA	GLU	PHE	ALA
3	LYS	LYS	MET	GLU	GLU	GLN	ASN	LYS	ARG	PHE
4	PHE	ALA	ASP	LYS	PRO	ASP	GLU	ALA	THR	LEU
5	SER	PRO	GLU	MET	LYS	GLU	HIS	TYR	GLU	LYS
6	PHE	GLU	LYS	MET	ILE	GLN	GLU	HIS	THR	ASP
7	LYS	PHE	ASN	LYS	LYS	MET	ARG	GLU	HIS	SER
8	GLU	HIS	PHE	LYS	ALA	LYS	PHE	ALA	GLU	LEU
9	LEU	GLU	GLN	GLN	LYS	ASN	ALA	GLN	PHE	PRO
10	GLY	LYS	GLY	SER	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	ALA	THR	THR	TYR	GLU	GLU	PHE	ALA	ALA
2	LYS	LEU	ASP	ARG	LEU	ASP	ALA	GLU	PHE	ALA
3	LYS	LYS	MET	GLU	GLU	GLN	ASN	LYS	ARG	PHE
4	PHE	ALA	ASP	LYS	PRO	ASP	GLU	ALA	THR	LEU
5	SER	PRO	GLU	MET	LYS	GLU	HIS	TYR	GLU	LYS
6	PHE	GLU	LYS	MET	ILE	GLN	GLU	HIS	THR	ASP
7	LYS	PHE	ASN	LYS	LYS	MET	ARG	GLU	HIS	SER
8	GLU	HIS	PHE	LYS	ALA	LYS	PHE	ALA	GLU	LEU
9	LEU	GLU	GLN	GLN	LYS	ASN	ALA	GLN	PHE	PRO
10	GLY	LYS	GLY	SER	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	ALA	THR	THR	TYR	GLU	GLU	PHE	ALA	ALA
2	LYS	LEU	ASP	ARG	LEU	ASP	ALA	GLU	PHE	ALA
3	LYS	LYS	MET	GLU	GLU	GLN	ASN	LYS	ARG	PHE
4	PHE	ALA	ASP	LYS	PRO	ASP	GLU	ALA	THR	LEU
5	SER	PRO	GLU	MET	LYS	GLU	HIS	TYR	GLU	LYS
6	PHE	GLU	LYS	MET	ILE	GLN	GLU	HIS	THR	ASP
7	LYS	PHE	ASN	LYS	LYS	MET	ARG	GLU	HIS	SER
8	GLU	HIS	PHE	LYS	ALA	LYS	PHE	ALA	GLU	LEU
9	LEU	GLU	GLN	GLN	LYS	ASN	ALA	GLN	PHE	PRO
10	GLY	LYS	GLY	SER	HIS	HIS	HIS	HIS	HIS	HIS