BMRB Entry 36528
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR36528
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Title: NMR Structure of OsCIE1-Ubox
Deposition date: 2022-12-13 Original release date: 2024-03-25
Authors: Zhang, Y.; Yu, C.; Lan, W.
Citation: Zhang, Y.; Yu, C.; Lan, W.. "Release of a Ubiquitin Brake Activates Pattern Recognition Receptor-mediated Immunity in Rice" .
Assembly members:
U-box domain-containing protein 12, polymer, 160 residues, 8952.272 Da.
Natural source: Common Name: Asian cultivated rice Taxonomy ID: 39947 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Oryza sativa
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
U-box domain-containing protein 12: GAMIIPDEFRCPISLELMQD
PVIVSSGQTYERSCIQKWLD
SGHKTCPKTQQPLSHTSLTP
NFVLKSLISQWCEANGIELP
- assigned_chemical_shifts
- spectral_peak_list
Data type | Count |
13C chemical shifts | 305 |
15N chemical shifts | 72 |
1H chemical shifts | 539 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | entity_1_1 | 1 |
2 | entity_1_2 | 1 |
Entities:
Entity 1, entity_1_1 160 residues - 8952.272 Da.
1 | GLY | ALA | MET | ILE | ILE | PRO | ASP | GLU | PHE | ARG | |
2 | CYS | PRO | ILE | SER | LEU | GLU | LEU | MET | GLN | ASP | |
3 | PRO | VAL | ILE | VAL | SER | SER | GLY | GLN | THR | TYR | |
4 | GLU | ARG | SER | CYS | ILE | GLN | LYS | TRP | LEU | ASP | |
5 | SER | GLY | HIS | LYS | THR | CYS | PRO | LYS | THR | GLN | |
6 | GLN | PRO | LEU | SER | HIS | THR | SER | LEU | THR | PRO | |
7 | ASN | PHE | VAL | LEU | LYS | SER | LEU | ILE | SER | GLN | |
8 | TRP | CYS | GLU | ALA | ASN | GLY | ILE | GLU | LEU | PRO |
Samples:
sample_1: U-box domain-containing protein 12, [U-13C; U-15N], mM; DTT 2 mM; sodium chloride 100 mM; TRIS 10 mM; H2O 90%; D2O, [U-2H], 10%
sample_conditions_1: ionic strength: 200 mM; pH: 7.5; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC aliphatic | sample_1 | isotropic | sample_conditions_1 |
2D 1H-13C HSQC aromatic | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY aliphatic | sample_1 | isotropic | sample_conditions_1 |
3D 1H-13C NOESY aromatic | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N NOESY | sample_1 | isotropic | sample_conditions_1 |
3D 1H-15N TOCSY | sample_1 | isotropic | sample_conditions_1 |
3D HCCH-TOCSY | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D HNCA | sample_1 | isotropic | sample_conditions_1 |
3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
Sparky, Goddard - chemical shift assignment
X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement, structure calculation
NMR spectrometers:
- Agilent DD2 800 MHz
- Agilent DD2 600 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts