BMRB Entry 4639

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PDB ID: 1fex
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4639
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of the hRap1 Myb motif reveals a canonical three helix bundle lacking the positive surface charge typical of Myb DNA binding domains

Deposition date:

2000-07-24

Original release date:

2002-04-03

Authors:

Hanaoka, S; Nagadoi, A; Yoshimura, S; Aimoto, S; Li, B; de Lange, T; Nishimura, Y

Citation:

Citation: Hanaoka, S; Nagadoi, A; Yoshimura, S; Aimoto, S; Li, B; de Lange, T; Nishimura, Y. "NMR structure of the hRap1 Myb motif reveals a canonical three helix bundle lacking the positive surface charge typical of Myb DNA binding domains" J. Mol. Biol. 312, 167-175 (2001).

Assembly members:

Assembly members:
TRF2-INTERACTING TELOMERIC RAP1 PROTEIN, polymer, 59 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TRF2-INTERACTING TELOMERIC RAP1 PROTEIN: GRIAFTDADDVAILTYVKEN ARSPSSVTGNALWKAMEKSS LTQHSWQSLKDRYLKHLRG

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	379

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	hRap1 Myb domain	1

Entities:

Entity 1, hRap1 Myb domain 59 residues - Formula weight is not available

1

GLY

ARG

ILE

ALA

PHE

THR

ASP

ALA

ASP

2

VAL

ALA

ILE

LEU

THR

TYR

VAL

LYS

GLU

ASN

3

ALA

ARG

SER

PRO

SER

VAL

THR

GLY

ASN

4

ALA

LEU

TRP

LYS

ALA

MET

GLU

LYS

SER

5

LEU

THR

GLN

HIS

SER

TRP

GLN

SER

LEU

LYS

6

ASP

ARG

TYR

LEU

LYS

HIS

LEU

ARG

GLY

Samples:

sample_1: TRF2-INTERACTING TELOMERIC RAP1 PROTEIN 1.0 mM; potassium phosphate 100 mM; NaN3 1.0 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 5.5; temperature: 300 K; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H DQF-COSY	sample_1	not available	sample_cond_1
2D 1H-1H NOESY	sample_1	not available	sample_cond_1
2D 1H-1H TOCSY	sample_1	not available	sample_cond_1

Software:

NMRPipe v4.2.5 - processing

X-PLOR v3.851 - structure solution

NMR spectrometers:

Bruker DMX 500 MHz
Bruker DMX 600 MHz

PDB	1FEX
DBJ	BAA91317 BAE00469 BAE01995 BAE87910 BAE88172
GB	AAF72711 AAH04465 AAH05841 AAH22428 AAH78171
REF	NP_001267142 NP_061848 XP_001110856 XP_003780774 XP_003829596
SP	Q4R4I0 Q9NYB0
AlphaFold	Q4R4I0 Q9NYB0