BMRB Entry 4649

Name: NMR Structure of N-terminal Domain of HTLV-I CA1-134
Published: 2001-05-09

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PDB ID: 1g03
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4649
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure of N-terminal Domain of HTLV-I CA1-134

Deposition date:

2000-10-05

Original release date:

2001-05-09

Authors:

Cornilescu, C.; Bouamr, F.; Yao, X.; Carter, C.; Tjandra, N.

Citation:

Citation: Cornilescu, C.; Bouamr, F.; Yao, X.; Carter, C.; Tjandra, N.. "Structural Analysis of the N-terminal Domain of the Human T-Cell Leukemia Virus Capsid Protein " J. Mol. Biol. 306, 783-797 (2001).

Assembly members:

Assembly members:
HTLV-I CAPSID PROTEIN, polymer, 134 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HTLV-I CAPSID PROTEIN: PVMHPHGAPPNHRPWQMKDL QAIKQEVSQAAPGSPQFMQT IRLAVQQFDPTAKDLQDLLQ YLCSSLVASLHHQQLDSLIS EAETRGITSYNPLAGPLRVQ ANNPQQQGLRREYQQLWLAA FAALPGSAKDPSWA

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	477
1H chemical shifts	621
15N chemical shifts	121

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HTLV-I Capsid Protein	1

Entities:

Entity 1, HTLV-I Capsid Protein 134 residues - Formula weight is not available

1

PRO

VAL

MET

HIS

PRO

HIS

GLY

ALA

PRO

2

ASN

HIS

ARG

PRO

TRP

GLN

MET

LYS

ASP

LEU

3

GLN

ALA

ILE

LYS

GLN

GLU

VAL

SER

GLN

ALA

4

ALA

PRO

GLY

SER

PRO

GLN

PHE

MET

GLN

THR

5

ILE

ARG

LEU

ALA

VAL

GLN

PHE

ASP

PRO

6

THR

ALA

LYS

ASP

LEU

GLN

ASP

LEU

GLN

7

TYR

LEU

CYS

SER

LEU

VAL

ALA

SER

LEU

8

HIS

GLN

LEU

ASP

SER

LEU

ILE

SER

9

GLU

ALA

GLU

THR

ARG

GLY

ILE

THR

SER

TYR

10

ASN

PRO

LEU

ALA

GLY

PRO

LEU

ARG

VAL

GLN

11

ALA

ASN

PRO

GLN

GLY

LEU

ARG

12

ARG

GLU

TYR

GLN

LEU

TRP

LEU

ALA

13

PHE

ALA

LEU

PRO

GLY

SER

ALA

LYS

ASP

14

PRO

SER

TRP

ALA

Samples:

sample_1: HTLV-I CAPSID PROTEIN, [U-15N; U-13C], 0.6 mM; H2O 95%; D2O 5%

sample_2: HTLV-I CAPSID PROTEIN, [U-15N; U-13C], 0.6 mM; D2O 99.9%

sample_3: HTLV-I CAPSID PROTEIN, [U-15N], 0.6 mM; H2O 95%; D2O 5%

sample_4: HTLV-I CAPSID PROTEIN, [U-15N; U-4% 13C DMPC/DHPC 3:1], 0.6 mM; H2O 95%; D2O 5%

sample_cond_1: pH: 6.0; temperature: 300 K; ionic strength: 10 mM; pressure: 1 atm

sample_cond_2: pH: 6.0; temperature: 302 K; ionic strength: 10 mM; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
4D 13C/15N-separated NOESY	not available	not available	not available
4D 13C-separated NOESY	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available

Software:

X-PLOR v3.840 - refinement

XWINNMR v2.5 - collection

NMRPipe v1.7 - data analysis

PIPP_STAPP v4.2.8 - data analysis

NMR spectrometers:

Bruker DMX 800 MHz

BMRB	4311
PDB	1G03 1QRJ
DBJ	BAA02929 BAF31288 BAH85785 BAP28584
EMBL	CAA34075 CAA62992
GB	AAA85325 AAA85841 AAA96672 AAB20767 AAC00185
REF	NP_049558 NP_057860 NP_057861 NP_057862 NP_955618
SP	P03345 P03362 P0C209 P0C210 P0C211
AlphaFold	P03345 P03362 P0C209 P0C210 P0C211