BMRB Entry 4749
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4749
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Title: NMR structure of a DNA three-way junction
Deposition date: 2000-06-01 Original release date: 2000-06-16
Authors: Thiviyanathan, Varatharasa; Luxon, B.; Leontis, Neocles; Donne, D.; Gorenstein, D.
Citation: Thiviyanathan, Varatharasa; Luxon, B.; Leontis, Neocles; Donne, D.; Gorenstein, D.. "Hybrid-Hybrid matrix structural refinement of a DNA three-way junction from 3D NOESY-NOES" J. Biomol. NMR 14, 209-221 (1999).
Assembly members:
DNA Three Way Junction, polymer, 10 residues, Formula weight is not available
DNA Three Way Junction, polymer, 10 residues, Formula weight is not available
DNA Three Way Junction, polymer, 12 residues, Formula weight is not available
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: unclassified Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
DNA Three Way Junction: GCTGCCACCG
DNA Three Way Junction: CGGTGCGTCC
DNA Three Way Junction: GGACGTCGCAGC
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | twj 1 | 1 |
| 2 | twj 2 | 2 |
| 3 | twj 3 | 3 |
Entities:
Entity 1, twj 1 10 residues - Formula weight is not available
| 1 | DG | DC | DT | DG | DC | DC | DA | DC | DC | DG |
Entity 2, twj 2 10 residues - Formula weight is not available
| 1 | DC | DG | DG | DT | DG | DC | DG | DT | DC | DC |
Entity 3, twj 3 12 residues - Formula weight is not available
| 1 | DG | DG | DA | DC | DG | DT | DC | DG | DC | DA | ||||
| 2 | DG | DC |
Samples:
sample_1: DNA Three Way Junction 2 mM; DNA Three Way Junction 2 mM; DNA Three Way Junction 2 mM; EDTA 0.5 mM; sodium_phosphate 100 mM; MgCl2 10 mM; NaCl 100 mM
sample_cond_1: ionic strength: 100 mM; pH: 6.8; temperature: 301 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | sample_cond_1 |
| 3D NOESY-NOESY | sample_1 | not available | sample_cond_1 |
Software:
MORASS v2.5 - iterative matrix relaxation
NMR spectrometers:
- Varian Unity plus 750 MHz