BMRB Entry 4936
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4936
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Title: 1H, 13C and 15N chemical shift assignments of the outer membrane protein OmpX from E.coli in DHPC micelles PubMed: 11226244
Deposition date: 2001-01-09 Original release date: 2005-09-22
Authors: Fernandez, Cesar; Adeishvili, Koba; Wuthrich, Kurt
Citation: Fernandez, Cesar; Adeishvili, Koba; Wuthrich, Kurt. "Transverse relaxation-optimized NMR spectroscopy with the outer membrane protein OmpX in dihexanoyl phosphatidylcholine micelles." Proc. Natl. Acad. Sci. U. S. A. 98, 2358-2363 (2001).
Assembly members:
Outer membrane protein X, polymer, 148 residues, Formula weight is not available
Natural source: Common Name: Escherichia coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET3b-OmpX
Entity Sequences (FASTA):
Outer membrane protein X: ATSTVTGGYAQSDAQGQMNK
MGGFNLKYRYEEDNSPLGVI
GSFTYTEKSRTASSGDYNKN
QYYGITAGPAYRINDWASIY
GVVGVGYGKFQTTEYPTYKH
DTTDYGFSYGAGLQFNPMEN
VALDFSYEQSRIRSVDVGTW
IAGVGYRF
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 140 |
| 13C chemical shifts | 407 |
| 15N chemical shifts | 140 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | OmpX | 1 |
Entities:
Entity 1, OmpX 148 residues - Formula weight is not available
| 1 | ALA | THR | SER | THR | VAL | THR | GLY | GLY | TYR | ALA | ||||
| 2 | GLN | SER | ASP | ALA | GLN | GLY | GLN | MET | ASN | LYS | ||||
| 3 | MET | GLY | GLY | PHE | ASN | LEU | LYS | TYR | ARG | TYR | ||||
| 4 | GLU | GLU | ASP | ASN | SER | PRO | LEU | GLY | VAL | ILE | ||||
| 5 | GLY | SER | PHE | THR | TYR | THR | GLU | LYS | SER | ARG | ||||
| 6 | THR | ALA | SER | SER | GLY | ASP | TYR | ASN | LYS | ASN | ||||
| 7 | GLN | TYR | TYR | GLY | ILE | THR | ALA | GLY | PRO | ALA | ||||
| 8 | TYR | ARG | ILE | ASN | ASP | TRP | ALA | SER | ILE | TYR | ||||
| 9 | GLY | VAL | VAL | GLY | VAL | GLY | TYR | GLY | LYS | PHE | ||||
| 10 | GLN | THR | THR | GLU | TYR | PRO | THR | TYR | LYS | HIS | ||||
| 11 | ASP | THR | THR | ASP | TYR | GLY | PHE | SER | TYR | GLY | ||||
| 12 | ALA | GLY | LEU | GLN | PHE | ASN | PRO | MET | GLU | ASN | ||||
| 13 | VAL | ALA | LEU | ASP | PHE | SER | TYR | GLU | GLN | SER | ||||
| 14 | ARG | ILE | ARG | SER | VAL | ASP | VAL | GLY | THR | TRP | ||||
| 15 | ILE | ALA | GLY | VAL | GLY | TYR | ARG | PHE |
Samples:
sample: Outer membrane protein X, [U-98% 13C; U-98% 15N; U-2H], 2.0 mM; DHPC 300 mM; H2O 97%; D2O 3%; KPO4 20 mM; NaCl 100 mM
exp_conditions: pH: 6.8; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| HNCA | sample | not available | exp_conditions |
| HN(CO)CA | sample | not available | exp_conditions |
| HNCACB | sample | not available | exp_conditions |
| 3D [1H,1H]-NOESY-[15N,1H]-TROSY | sample | not available | exp_conditions |
Software:
XEASY -
NMR spectrometers:
- Bruker DRX 750 MHz
Related Database Links:
| BMRB | 15201 18796 18797 |
| PDB | |
| DBJ | BAA35486 BAB34315 BAG76394 BAI24257 BAI29701 |
| EMBL | CAP75284 CAQ31315 CAQ97717 CAR02170 CAR06985 |
| GB | AAA21856 AAA66329 AAC73901 AAG55186 AAN42399 |
| REF | NP_286578 NP_308919 NP_415335 NP_706692 NP_752830 |
| SP | P0A917 P0A918 P0A919 P0A920 |
| AlphaFold | P0A920 P0A917 P0A918 P0A919 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts